Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Gm38317-201ENSMUST00000195564 343 ntBASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Gm44882-201ENSMUST00000205702 802 ntBASIC11.28□□□□□ -0.6
Trim3Q9R1R2 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 AC154222.2-201ENSMUST00000225848 607 ntBASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Olfr279-203ENSMUST00000216822 5605 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Gm9361-201ENSMUST00000198695 1507 ntBASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Nudt15-201ENSMUST00000043813 3579 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Tmod2-201ENSMUST00000064433 9884 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Pcgf2-207ENSMUST00000179765 2485 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Flnc-201ENSMUST00000065090 9038 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Gm28036-202ENSMUST00000132494 5505 ntAPPRIS P5 TSL 2 BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Abat-201ENSMUST00000065987 4636 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Tfr2-204ENSMUST00000196471 2839 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trim3Q9R1R2 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trim3Q9R1R2 Gm6211-201ENSMUST00000147973 4275 ntBASIC11.27□□□□□ -0.6
Trim3Q9R1R2 Gm15991-202ENSMUST00000212123 3565 ntBASIC11.27□□□□□ -0.6
Trim3Q9R1R2 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC11.27□□□□□ -0.6
Trim3Q9R1R2 Fip1l1-204ENSMUST00000113536 4769 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trim3Q9R1R2 Fbln2-201ENSMUST00000041544 4786 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trim3Q9R1R2 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trim3Q9R1R2 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trim3Q9R1R2 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trim3Q9R1R2 Ptprh-202ENSMUST00000166650 3642 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.6
Trim3Q9R1R2 Neurod6-201ENSMUST00000044767 2150 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Trim3Q9R1R2 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
Trim3Q9R1R2 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC11.27□□□□□ -0.6
Trim3Q9R1R2 Gm10782-202ENSMUST00000223775 1480 ntBASIC11.27□□□□□ -0.6
Trim3Q9R1R2 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Socs6-201ENSMUST00000070116 6036 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Apbb1-201ENSMUST00000081165 2530 ntAPPRIS ALT1 TSL 5 BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Gm24830-201ENSMUST00000102024 166 ntBASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Gm15808-201ENSMUST00000119046 604 ntBASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Gm25890-201ENSMUST00000177643 165 ntBASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Rnu1b2-201ENSMUST00000178073 165 ntBASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Rnu1b1-201ENSMUST00000178250 165 ntBASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Gm22614-201ENSMUST00000178300 165 ntBASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 AA914427-201ENSMUST00000193194 1166 ntBASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Gm42937-201ENSMUST00000197360 752 ntBASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Gm22042-201ENSMUST00000082989 165 ntBASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Gm26232-201ENSMUST00000083360 166 ntBASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Rnu1b6-201ENSMUST00000083839 166 ntBASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Gm26110-201ENSMUST00000083971 165 ntBASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Thsd4-202ENSMUST00000098660 8796 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Adgrl3-210ENSMUST00000119788 5394 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Ndc1-204ENSMUST00000139560 4584 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Gm42498-201ENSMUST00000199981 1372 ntBASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Crkl-201ENSMUST00000006293 3863 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Epm2aip1-202ENSMUST00000135807 4245 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
Trim3Q9R1R2 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Banp-204ENSMUST00000170857 5444 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Pitpnc1-202ENSMUST00000103064 6329 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Ppp1r16b-202ENSMUST00000052927 6685 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Acsm1-201ENSMUST00000047929 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Cad-203ENSMUST00000200953 6489 ntTSL 5 BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Gm36957-201ENSMUST00000192982 2824 ntBASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Xkr5-201ENSMUST00000055503 3176 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC11.26□□□□□ -0.61
Trim3Q9R1R2 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms