Protein–RNA interactions for Protein: Q91Y16

Pcdha3, Protocadherin alpha 3, mousemouse

Predictions only

Length 942 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha3Q91Y16 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Pcdha3Q91Y16 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Pcdha3Q91Y16 Gstcd-201ENSMUST00000029651 3503 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Pcdha3Q91Y16 Asl-203ENSMUST00000160129 2413 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Pcdha3Q91Y16 Ssh1-201ENSMUST00000077689 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Pcdha3Q91Y16 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Pcdha3Q91Y16 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Pcdha3Q91Y16 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC12.53□□□□□ -0.4
Pcdha3Q91Y16 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Pcdha3Q91Y16 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Pcdha3Q91Y16 Esrp1-201ENSMUST00000043781 3743 ntTSL 5 BASIC12.53□□□□□ -0.4
Pcdha3Q91Y16 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Pcdha3Q91Y16 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Pcdha3Q91Y16 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Pcdha3Q91Y16 Gdpd5-208ENSMUST00000213887 2711 ntTSL 5 BASIC12.53□□□□□ -0.4
Pcdha3Q91Y16 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC12.53□□□□□ -0.4
Pcdha3Q91Y16 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Pcdha3Q91Y16 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC12.53□□□□□ -0.4
Pcdha3Q91Y16 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC12.52□□□□□ -0.4
Pcdha3Q91Y16 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC12.52□□□□□ -0.4
Pcdha3Q91Y16 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Pcdha3Q91Y16 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
Pcdha3Q91Y16 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Pcdha3Q91Y16 H2-M2-201ENSMUST00000016427 1550 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Pcdha3Q91Y16 AC154671.1-201ENSMUST00000228617 1578 ntBASIC12.52□□□□□ -0.4
Pcdha3Q91Y16 AC093022.4-203ENSMUST00000228523 2657 ntBASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Gm45428-201ENSMUST00000209619 1789 ntBASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Gm12036-201ENSMUST00000120008 530 ntBASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Rprl1-201ENSMUST00000158050 327 ntBASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Gm17812-201ENSMUST00000204935 318 ntBASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 A630075F10Rik-201ENSMUST00000180895 1913 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Ighg1-202ENSMUST00000194304 2482 ntAPPRIS P5 BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Gm29050-201ENSMUST00000190732 2528 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Dab2ip-207ENSMUST00000112992 6184 ntTSL 5 BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Slurp1-202ENSMUST00000190433 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Pcdha3Q91Y16 Mmel1-207ENSMUST00000163732 2935 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Kcnv2-201ENSMUST00000056708 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 5930412G12Rik-201ENSMUST00000091324 2403 ntTSL 5 BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Axl-202ENSMUST00000085948 3899 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Alox5-202ENSMUST00000164547 1854 ntTSL 5 BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Gm6157-201ENSMUST00000199935 1897 ntBASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Nek4-201ENSMUST00000050171 2793 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Kansl3-201ENSMUST00000010597 4663 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Gm13376-201ENSMUST00000128743 448 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Gm27627-201ENSMUST00000183644 150 ntBASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Gm9136-201ENSMUST00000193368 454 ntBASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Gm8913-201ENSMUST00000209491 641 ntBASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Nicn1-201ENSMUST00000035227 2133 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Pcdha3Q91Y16 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 44 ms