Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC9.69□□□□□ -0.86
Cdx1P18111 Zfp384-205ENSMUST00000112424 2673 ntAPPRIS ALT2 TSL 5 BASIC9.69□□□□□ -0.86
Cdx1P18111 Kyat1-206ENSMUST00000113663 2026 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Gm11400-201ENSMUST00000120853 1214 ntBASIC9.69□□□□□ -0.86
Cdx1P18111 Gm1335-201ENSMUST00000121653 386 ntBASIC9.69□□□□□ -0.86
Cdx1P18111 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC9.69□□□□□ -0.86
Cdx1P18111 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC9.69□□□□□ -0.86
Cdx1P18111 Csf1-201ENSMUST00000014743 4176 ntAPPRIS P3 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Gatsl2-201ENSMUST00000016088 7367 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Spata13-207ENSMUST00000160973 7467 ntAPPRIS P3 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC9.69□□□□□ -0.86
Cdx1P18111 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC9.69□□□□□ -0.86
Cdx1P18111 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Casc1-208ENSMUST00000204105 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC9.69□□□□□ -0.86
Cdx1P18111 Gabra1-201ENSMUST00000020707 4688 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC9.69□□□□□ -0.86
Cdx1P18111 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Gm2824-203ENSMUST00000226189 1228 ntBASIC9.69□□□□□ -0.86
Cdx1P18111 Sorbs3-201ENSMUST00000022682 2914 ntAPPRIS P2 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 AC154276.1-201ENSMUST00000228874 1299 ntBASIC9.69□□□□□ -0.86
Cdx1P18111 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Gstcd-201ENSMUST00000029651 3503 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Ptgfr-201ENSMUST00000029670 6624 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Lao1-201ENSMUST00000058651 2349 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Rn7sk-201ENSMUST00000083103 331 ntBASIC9.69□□□□□ -0.86
Cdx1P18111 Gm26315-201ENSMUST00000083890 321 ntBASIC9.69□□□□□ -0.86
Cdx1P18111 Brd3-201ENSMUST00000028282 5419 ntAPPRIS P3 TSL 5 BASIC9.69□□□□□ -0.86
Cdx1P18111 Ehmt1-203ENSMUST00000102938 4680 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Sema3g-201ENSMUST00000090180 4540 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 1700019D03Rik-201ENSMUST00000050567 3641 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 9530082P21Rik-203ENSMUST00000181605 3162 ntTSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Slc43a1-204ENSMUST00000121114 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Nipbl-201ENSMUST00000052965 8815 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Mpl-202ENSMUST00000102671 2934 ntAPPRIS P3 TSL 1 (best) BASIC9.69□□□□□ -0.86
Cdx1P18111 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC9.69□□□□□ -0.86
Cdx1P18111 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Araf-201ENSMUST00000001155 2358 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Xpnpep1-211ENSMUST00000183274 2120 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Brsk2-216ENSMUST00000174499 4223 ntAPPRIS ALT2 TSL 5 BASIC9.68□□□□□ -0.86
Cdx1P18111 Pphln1-201ENSMUST00000049122 4023 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Tmod2-201ENSMUST00000064433 9884 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 E330021D16Rik-203ENSMUST00000204830 1813 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Ppp1r12a-205ENSMUST00000219263 3355 ntAPPRIS P1 TSL 5 BASIC9.68□□□□□ -0.86
Cdx1P18111 Sel1l-201ENSMUST00000021347 6300 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC9.68□□□□□ -0.86
Cdx1P18111 Prrxl1-204ENSMUST00000189022 2985 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Nfx1-201ENSMUST00000030133 4349 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Gtf2i-216ENSMUST00000173888 2820 ntTSL 5 BASIC9.68□□□□□ -0.86
Cdx1P18111 Brwd1-204ENSMUST00000113829 9843 ntAPPRIS ALT2 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Arfgap1-201ENSMUST00000029092 2714 ntAPPRIS P3 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 4632427E13Rik-202ENSMUST00000147198 6559 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Gm28693-201ENSMUST00000189622 2638 ntBASIC9.68□□□□□ -0.86
Cdx1P18111 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC9.68□□□□□ -0.86
Cdx1P18111 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC9.68□□□□□ -0.86
Cdx1P18111 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Gm12203-201ENSMUST00000118235 598 ntBASIC9.68□□□□□ -0.86
Cdx1P18111 Gm12209-201ENSMUST00000120089 596 ntBASIC9.68□□□□□ -0.86
Cdx1P18111 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC9.68□□□□□ -0.86
Cdx1P18111 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC9.68□□□□□ -0.86
Cdx1P18111 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC9.68□□□□□ -0.86
Cdx1P18111 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC9.68□□□□□ -0.86
Cdx1P18111 Gm18054-201ENSMUST00000207539 555 ntBASIC9.68□□□□□ -0.86
Cdx1P18111 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC9.68□□□□□ -0.86
Cdx1P18111 Gm45880-201ENSMUST00000213041 853 ntBASIC9.68□□□□□ -0.86
Cdx1P18111 Gm7172-201ENSMUST00000218047 1152 ntBASIC9.68□□□□□ -0.86
Cdx1P18111 Gm19309-201ENSMUST00000218295 205 ntBASIC9.68□□□□□ -0.86
Cdx1P18111 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 CU024892.2-201ENSMUST00000224608 832 ntBASIC9.68□□□□□ -0.86
Cdx1P18111 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Cdx1P18111 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
Retrieved 100 of 76,532 protein–RNA pairs in 62.5 ms