Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC9.86□□□□□ -0.83
Hmgb3O54879 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC9.86□□□□□ -0.83
Hmgb3O54879 Gm22121-201ENSMUST00000175148 54 ntBASIC9.86□□□□□ -0.83
Hmgb3O54879 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC9.86□□□□□ -0.83
Hmgb3O54879 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC9.86□□□□□ -0.83
Hmgb3O54879 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC9.86□□□□□ -0.83
Hmgb3O54879 Aldh16a1-206ENSMUST00000209963 3537 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Wdr43-201ENSMUST00000047086 3450 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Map4-203ENSMUST00000163979 3320 ntAPPRIS ALT2 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Mirg-208ENSMUST00000182499 3187 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Gmppb-202ENSMUST00000112295 2702 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Tmem184a-202ENSMUST00000110832 4326 ntAPPRIS P3 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Gm32828-202ENSMUST00000219198 2111 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Gm43823-201ENSMUST00000197391 1808 ntBASIC9.86□□□□□ -0.83
Hmgb3O54879 Slc16a1-201ENSMUST00000046212 4426 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Acsl4-201ENSMUST00000033634 5280 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Srr-201ENSMUST00000065211 3699 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC9.86□□□□□ -0.83
Hmgb3O54879 Ifnar1-201ENSMUST00000023689 3909 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Galnt15-201ENSMUST00000022460 6326 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Syt2-201ENSMUST00000121990 6879 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Neurod6-201ENSMUST00000044767 2150 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hmgb3O54879 Msh5-201ENSMUST00000007250 2886 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hmgb3O54879 Ddx11-201ENSMUST00000163605 4149 ntAPPRIS P2 TSL 5 BASIC9.85□□□□□ -0.83
Hmgb3O54879 Ube2v1-202ENSMUST00000109207 2041 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hmgb3O54879 Ralgps1-205ENSMUST00000131298 6035 ntTSL 1 (best) BASIC9.85□□□□□ -0.83
Hmgb3O54879 Pom121l2-201ENSMUST00000017126 2960 ntAPPRIS P4 BASIC9.85□□□□□ -0.83
Hmgb3O54879 Arhgef2-207ENSMUST00000175903 3356 ntAPPRIS ALT2 TSL 5 BASIC9.85□□□□□ -0.83
Hmgb3O54879 Zscan10-201ENSMUST00000095595 2698 ntAPPRIS P3 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hmgb3O54879 Med12l-206ENSMUST00000199659 11006 ntAPPRIS P2 TSL 5 BASIC9.85□□□□□ -0.83
Hmgb3O54879 Pip5k1a-206ENSMUST00000107236 3618 ntAPPRIS P3 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hmgb3O54879 Traf7-202ENSMUST00000088464 2504 ntAPPRIS P1 TSL 5 BASIC9.85□□□□□ -0.83
Hmgb3O54879 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hmgb3O54879 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hmgb3O54879 Matn2-205ENSMUST00000227759 3569 ntAPPRIS ALT2 BASIC9.85□□□□□ -0.83
Hmgb3O54879 Myo6-201ENSMUST00000035889 7871 ntTSL 5 BASIC9.85□□□□□ -0.83
Hmgb3O54879 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hmgb3O54879 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC9.85□□□□□ -0.83
Hmgb3O54879 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC9.85□□□□□ -0.83
Hmgb3O54879 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC9.85□□□□□ -0.83
Hmgb3O54879 Gm16215-201ENSMUST00000161990 637 ntBASIC9.85□□□□□ -0.83
Hmgb3O54879 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hmgb3O54879 Gm4034-201ENSMUST00000187674 480 ntBASIC9.85□□□□□ -0.83
Hmgb3O54879 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC9.85□□□□□ -0.83
Hmgb3O54879 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC9.85□□□□□ -0.83
Hmgb3O54879 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hmgb3O54879 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC9.85□□□□□ -0.83
Hmgb3O54879 Sertad1-201ENSMUST00000008528 1233 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hmgb3O54879 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC9.85□□□□□ -0.83
Hmgb3O54879 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hmgb3O54879 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hmgb3O54879 Lrrc36-201ENSMUST00000067305 2082 ntTSL 1 (best) BASIC9.85□□□□□ -0.83
Hmgb3O54879 Ccnb1-201ENSMUST00000072119 2489 ntAPPRIS P2 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hmgb3O54879 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hmgb3O54879 Plscr1-201ENSMUST00000093801 2302 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hmgb3O54879 Miga2-201ENSMUST00000077977 3381 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hmgb3O54879 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hmgb3O54879 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC9.85□□□□□ -0.83
Hmgb3O54879 Syn2-202ENSMUST00000169345 3854 ntAPPRIS ALT2 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hmgb3O54879 Vill-202ENSMUST00000074734 2440 ntTSL 1 (best) BASIC9.85□□□□□ -0.83
Hmgb3O54879 D130017N08Rik-203ENSMUST00000196629 2265 ntBASIC9.85□□□□□ -0.83
Hmgb3O54879 Zbtb21-203ENSMUST00000113734 6010 ntAPPRIS P4 TSL 2 BASIC9.85□□□□□ -0.83
Hmgb3O54879 Smndc1-201ENSMUST00000025997 2125 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hmgb3O54879 Ccdc97-201ENSMUST00000002683 3032 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hmgb3O54879 Gpat3-202ENSMUST00000092990 3035 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
Hmgb3O54879 4933413J09Rik-202ENSMUST00000059648 3387 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Ptprh-201ENSMUST00000049113 3495 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Ncbp3-201ENSMUST00000021135 12106 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Pip4k2c-201ENSMUST00000013970 3307 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Rnf40-201ENSMUST00000033088 3906 ntTSL 5 BASIC9.84□□□□□ -0.83
Hmgb3O54879 A830010M20Rik-208ENSMUST00000211896 5256 ntAPPRIS P1 TSL 5 BASIC9.84□□□□□ -0.83
Hmgb3O54879 Tcof1-204ENSMUST00000176630 4529 ntAPPRIS P3 TSL 5 BASIC9.84□□□□□ -0.83
Hmgb3O54879 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Tmem151a-201ENSMUST00000077066 4006 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Piwil1-201ENSMUST00000086056 4016 ntAPPRIS P2 TSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Chek1-202ENSMUST00000172702 3797 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Lactb2-201ENSMUST00000027071 4494 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC9.84□□□□□ -0.83
Hmgb3O54879 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC9.84□□□□□ -0.83
Hmgb3O54879 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC9.84□□□□□ -0.83
Hmgb3O54879 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC9.84□□□□□ -0.83
Hmgb3O54879 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Gm12384-201ENSMUST00000119228 919 ntBASIC9.84□□□□□ -0.83
Hmgb3O54879 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC9.84□□□□□ -0.83
Hmgb3O54879 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
Hmgb3O54879 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC9.84□□□□□ -0.83
Hmgb3O54879 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC9.84□□□□□ -0.83
Hmgb3O54879 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC9.84□□□□□ -0.83
Retrieved 100 of 76,532 protein–RNA pairs in 75 ms