Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp47Q8BY87 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp47Q8BY87 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Usp47Q8BY87 E330021D16Rik-203ENSMUST00000204830 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp47Q8BY87 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp47Q8BY87 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp47Q8BY87 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp47Q8BY87 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp47Q8BY87 Gm18986-201ENSMUST00000216029 1986 ntBASIC16.82■□□□□ 0.28
Usp47Q8BY87 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Usp47Q8BY87 Eef1d-205ENSMUST00000109972 1624 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp47Q8BY87 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp47Q8BY87 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp47Q8BY87 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC16.81■□□□□ 0.28
Usp47Q8BY87 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp47Q8BY87 Gm22920-201ENSMUST00000102175 109 ntBASIC16.81■□□□□ 0.28
Usp47Q8BY87 Gm13328-201ENSMUST00000120816 1020 ntBASIC16.81■□□□□ 0.28
Usp47Q8BY87 Gm7666-201ENSMUST00000146631 819 ntBASIC16.81■□□□□ 0.28
Usp47Q8BY87 Gm11706-201ENSMUST00000151282 316 ntTSL 5 BASIC16.81■□□□□ 0.28
Usp47Q8BY87 Tmem242-203ENSMUST00000188282 822 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Usp47Q8BY87 Gm44270-201ENSMUST00000203084 1234 ntBASIC16.81■□□□□ 0.28
Usp47Q8BY87 Olfr1380-201ENSMUST00000204300 938 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Usp47Q8BY87 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Usp47Q8BY87 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Usp47Q8BY87 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
Usp47Q8BY87 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
Usp47Q8BY87 CT009489.1-201ENSMUST00000227740 1893 ntBASIC16.81■□□□□ 0.28
Usp47Q8BY87 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Usp47Q8BY87 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp47Q8BY87 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Usp47Q8BY87 Gm45199-201ENSMUST00000207640 1507 ntBASIC16.81■□□□□ 0.28
Usp47Q8BY87 Dnaic2-202ENSMUST00000092469 2799 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Usp47Q8BY87 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp47Q8BY87 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Usp47Q8BY87 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Usp47Q8BY87 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
Usp47Q8BY87 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp47Q8BY87 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC16.8■□□□□ 0.28
Usp47Q8BY87 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC16.8■□□□□ 0.28
Usp47Q8BY87 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp47Q8BY87 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp47Q8BY87 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC16.8■□□□□ 0.28
Usp47Q8BY87 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC16.8■□□□□ 0.28
Usp47Q8BY87 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Usp47Q8BY87 Gm44126-201ENSMUST00000204831 514 ntBASIC16.8■□□□□ 0.28
Usp47Q8BY87 Gm43916-201ENSMUST00000205062 967 ntBASIC16.8■□□□□ 0.28
Usp47Q8BY87 AC154680.1-201ENSMUST00000224376 859 ntBASIC16.8■□□□□ 0.28
Usp47Q8BY87 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp47Q8BY87 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Usp47Q8BY87 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp47Q8BY87 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Usp47Q8BY87 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC16.8■□□□□ 0.28
Usp47Q8BY87 Gm1840-201ENSMUST00000051687 1432 ntBASIC16.8■□□□□ 0.28
Usp47Q8BY87 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp47Q8BY87 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp47Q8BY87 Npy5r-202ENSMUST00000211920 1715 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Usp47Q8BY87 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC16.8■□□□□ 0.28
Usp47Q8BY87 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Usp47Q8BY87 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Usp47Q8BY87 Alox5-202ENSMUST00000164547 1854 ntTSL 5 BASIC16.8■□□□□ 0.28
Usp47Q8BY87 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Usp47Q8BY87 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Usp47Q8BY87 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp47Q8BY87 Gdpd5-208ENSMUST00000213887 2711 ntTSL 5 BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Gm15352-201ENSMUST00000118696 270 ntBASIC16.79■□□□□ 0.28
Usp47Q8BY87 Gm14235-201ENSMUST00000142445 366 ntTSL 3 BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Cldn16-202ENSMUST00000161053 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Gm38314-201ENSMUST00000195709 625 ntBASIC16.79■□□□□ 0.28
Usp47Q8BY87 Gm8285-201ENSMUST00000208293 759 ntBASIC16.79■□□□□ 0.28
Usp47Q8BY87 Gm40576-201ENSMUST00000221773 1152 ntTSL 5 BASIC16.79■□□□□ 0.28
Usp47Q8BY87 CT010465.1-201ENSMUST00000222463 809 ntTSL 5 BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Try10-201ENSMUST00000072103 860 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp47Q8BY87 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Rsg1-201ENSMUST00000097813 985 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Olfr520-202ENSMUST00000220185 1330 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Mpv17-202ENSMUST00000200744 1653 ntTSL 2 BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Usp47Q8BY87 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Usp47Q8BY87 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Usp47Q8BY87 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Eno1-201ENSMUST00000080149 1902 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp47Q8BY87 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms