Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 3830432H09Rik-202ENSMUST00000188909 2414 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Rbm10-207ENSMUST00000177738 2790 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Tmem168-206ENSMUST00000149123 3337 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Gm23270-201ENSMUST00000104055 131 ntBASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Gm11531-201ENSMUST00000117614 555 ntBASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Rps4l-202ENSMUST00000204242 789 ntBASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Brwd1-202ENSMUST00000099502 8547 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Sorbs1-203ENSMUST00000165212 2175 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Gm8228-201ENSMUST00000189949 2192 ntBASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Pex26-201ENSMUST00000088561 4093 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 E030013I19Rik-201ENSMUST00000148089 2754 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Pla2g15-201ENSMUST00000034377 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Prpf40b-208ENSMUST00000136980 3047 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Birc3-201ENSMUST00000013949 2667 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Sdc1-201ENSMUST00000020911 3157 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Mindy1-202ENSMUST00000107187 2827 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Qrsl1-201ENSMUST00000020012 1981 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Gm25214-201ENSMUST00000104573 129 ntBASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Gm5863-201ENSMUST00000121760 1008 ntBASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 1700034G24Rik-202ENSMUST00000183186 1081 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Gm31597-201ENSMUST00000211176 515 ntTSL 2 BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 AC167229.2-201ENSMUST00000218902 675 ntTSL 5 BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Gm36987-201ENSMUST00000194704 2979 ntBASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Gm19792-201ENSMUST00000222522 2021 ntTSL 5 BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Uqcc1-203ENSMUST00000109632 2313 ntTSL 5 BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Rps6ka6-202ENSMUST00000082034 4170 ntAPPRIS P2 TSL 5 BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Cbx7-203ENSMUST00000109616 2899 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Tcirg1-204ENSMUST00000126070 3041 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Epb41l3-202ENSMUST00000112680 4073 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Sh3rf1Q69ZI1 Mical1-202ENSMUST00000099934 3292 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 AC167669.2-201ENSMUST00000224417 1620 ntBASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Tmcc2-203ENSMUST00000132435 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Zfp41-204ENSMUST00000161785 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Nefl-201ENSMUST00000022639 3380 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Zfp772-201ENSMUST00000074455 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Dtx3l-202ENSMUST00000114885 2648 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Gtf2i-210ENSMUST00000173341 4302 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Myo15b-208ENSMUST00000222123 5154 ntTSL 5 BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Gm16505-201ENSMUST00000179981 232 ntBASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Gm9022-201ENSMUST00000182482 992 ntBASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Gm9678-201ENSMUST00000198979 1149 ntBASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC12.15□□□□□ -0.46
Sh3rf1Q69ZI1 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC12.15□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 49.3 ms