Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gfra1-203ENSMUST00000129100 4415 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Eif2s1-201ENSMUST00000071230 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Gm38569-201ENSMUST00000205476 2228 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Gm44152-201ENSMUST00000205007 1691 ntBASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Cacna1c-227ENSMUST00000220022 7765 ntTSL 5 BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Cadm1-203ENSMUST00000114547 4444 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Ric3-201ENSMUST00000055993 5281 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Gm5616-201ENSMUST00000165252 384 ntBASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Gm8741-201ENSMUST00000174736 384 ntBASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Olfr1347-205ENSMUST00000220413 964 ntBASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Rprd1b-203ENSMUST00000109518 4399 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Pex26-201ENSMUST00000088561 4093 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC12.81□□□□□ -0.36
Upf3bQ3ULL6 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Pitpnm2-201ENSMUST00000086123 6620 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Paupar-201ENSMUST00000194826 3482 ntBASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Gm15172-201ENSMUST00000118945 1046 ntBASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Gm8956-201ENSMUST00000203939 825 ntBASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Gm45186-201ENSMUST00000206874 478 ntBASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Grik3-201ENSMUST00000030676 8973 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 AC129931.1-201ENSMUST00000228865 1861 ntBASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Tinf2-201ENSMUST00000007733 2956 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 AC130671.2-201ENSMUST00000227224 1621 ntBASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC12.8□□□□□ -0.36
Upf3bQ3ULL6 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC12.8□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms