Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lig3P97386 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lig3P97386 Rnf6-201ENSMUST00000067837 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lig3P97386 5031434O11Rik-201ENSMUST00000180404 3731 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Lig3P97386 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Lig3P97386 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Lig3P97386 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lig3P97386 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC13.15□□□□□ -0.31
Lig3P97386 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Klhl14-202ENSMUST00000122333 4423 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Lig3P97386 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Gm3287-205ENSMUST00000228893 1332 ntBASIC13.14□□□□□ -0.31
Lig3P97386 Olfr177-202ENSMUST00000217377 2401 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Lig3P97386 9430038I01Rik-203ENSMUST00000120340 4643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Xkr5-201ENSMUST00000055503 3176 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Klhl22-208ENSMUST00000165790 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Lig3P97386 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Jmjd1c-211ENSMUST00000174408 8377 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Lig3P97386 Jmjd1c-201ENSMUST00000051446 8382 ntAPPRIS P4 TSL 5 BASIC13.14□□□□□ -0.31
Lig3P97386 Bhlha15-201ENSMUST00000060747 3494 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC13.14□□□□□ -0.31
Lig3P97386 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Robo3-201ENSMUST00000034643 4712 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Lig3P97386 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Gm45532-201ENSMUST00000210342 3620 ntBASIC13.14□□□□□ -0.31
Lig3P97386 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Wdr45-206ENSMUST00000116634 1250 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Lig3P97386 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC13.14□□□□□ -0.31
Lig3P97386 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC13.14□□□□□ -0.31
Lig3P97386 4930506C21Rik-203ENSMUST00000130639 909 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 4930583K01Rik-201ENSMUST00000138180 925 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Lig3P97386 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC13.14□□□□□ -0.31
Lig3P97386 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
Lig3P97386 Gm44999-201ENSMUST00000207456 1493 ntBASIC13.14□□□□□ -0.31
Lig3P97386 Nefm-202ENSMUST00000111089 3680 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Rbm8a-202ENSMUST00000196456 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Rbm8a-206ENSMUST00000200647 2620 ntTSL 2 BASIC13.14□□□□□ -0.31
Lig3P97386 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Gm42840-201ENSMUST00000200303 2251 ntBASIC13.14□□□□□ -0.31
Lig3P97386 Arhgef3-204ENSMUST00000225949 3198 ntBASIC13.14□□□□□ -0.31
Lig3P97386 Mzf1-201ENSMUST00000069289 3597 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Lig3P97386 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
Lig3P97386 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Lig3P97386 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Lig3P97386 Gm10548-201ENSMUST00000097631 2629 ntBASIC13.13□□□□□ -0.31
Lig3P97386 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 Grm1-201ENSMUST00000044306 6930 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 Grm1-202ENSMUST00000105560 4265 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 Ahsa2-202ENSMUST00000109539 3583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 Kndc1-201ENSMUST00000053445 7299 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Lig3P97386 Fam129a-203ENSMUST00000111875 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 Gm13888-201ENSMUST00000119148 422 ntBASIC13.13□□□□□ -0.31
Lig3P97386 Gm15432-201ENSMUST00000121106 195 ntBASIC13.13□□□□□ -0.31
Lig3P97386 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 Gm16308-201ENSMUST00000162171 940 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC13.13□□□□□ -0.31
Lig3P97386 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 Crnde-207ENSMUST00000180102 732 ntTSL 3 BASIC13.13□□□□□ -0.31
Lig3P97386 Gm9540-201ENSMUST00000188230 478 ntBASIC13.13□□□□□ -0.31
Lig3P97386 Gm38297-201ENSMUST00000195122 1057 ntBASIC13.13□□□□□ -0.31
Lig3P97386 Gm34045-201ENSMUST00000217700 988 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Lig3P97386 Gm45925-201ENSMUST00000218882 744 ntBASIC13.13□□□□□ -0.31
Lig3P97386 CT025551.1-201ENSMUST00000223996 692 ntBASIC13.13□□□□□ -0.31
Lig3P97386 AC138604.1-201ENSMUST00000226969 739 ntBASIC13.13□□□□□ -0.31
Lig3P97386 Olfr959-201ENSMUST00000079178 1055 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Lig3P97386 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC13.13□□□□□ -0.31
Lig3P97386 2410002F23Rik-204ENSMUST00000107948 2908 ntAPPRIS P2 TSL 2 BASIC13.13□□□□□ -0.31
Lig3P97386 Atic-201ENSMUST00000027384 2845 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 79.1 ms