Protein–RNA interactions for Protein: P39749

Fen1, Flap endonuclease 1, mousemouse

Predictions only

Length 378 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Fen1P39749 Lhx9-205ENSMUST00000112030 4633 ntTSL 5 BASIC12.05□□□□□ -0.48
Fen1P39749 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Fen1P39749 App-206ENSMUST00000227723 8167 ntAPPRIS ALT2 BASIC12.05□□□□□ -0.48
Fen1P39749 Fam107b-201ENSMUST00000027965 3156 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Fen1P39749 Cyp26b1-202ENSMUST00000168003 4170 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Fen1P39749 Cyp26b1-201ENSMUST00000077705 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Fen1P39749 Timm22-201ENSMUST00000021203 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Fen1P39749 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC12.05□□□□□ -0.48
Fen1P39749 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Fen1P39749 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC12.05□□□□□ -0.48
Fen1P39749 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Fen1P39749 Gm4271-201ENSMUST00000174444 973 ntBASIC12.05□□□□□ -0.48
Fen1P39749 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC12.05□□□□□ -0.48
Fen1P39749 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC12.05□□□□□ -0.48
Fen1P39749 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC12.05□□□□□ -0.48
Fen1P39749 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC12.05□□□□□ -0.48
Fen1P39749 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Fen1P39749 Ehbp1-202ENSMUST00000109563 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Fen1P39749 Kcnh7-203ENSMUST00000112454 3073 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Fen1P39749 Lef1-201ENSMUST00000029611 3482 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Fen1P39749 Ddx11-205ENSMUST00000224497 4141 ntAPPRIS ALT2 BASIC12.05□□□□□ -0.48
Fen1P39749 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Fen1P39749 Gsdme-205ENSMUST00000170142 2133 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Fen1P39749 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC12.05□□□□□ -0.48
Fen1P39749 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Fen1P39749 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC12.05□□□□□ -0.48
Fen1P39749 Gm3287-205ENSMUST00000228893 1332 ntBASIC12.05□□□□□ -0.48
Fen1P39749 Topbp1-201ENSMUST00000035164 5224 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Fen1P39749 Gabra1-201ENSMUST00000020707 4688 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Fen1P39749 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC12.05□□□□□ -0.48
Fen1P39749 Sema4c-202ENSMUST00000191642 3892 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Fen1P39749 4833420G17Rik-204ENSMUST00000225186 2627 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Fen1P39749 Cyb5b-201ENSMUST00000034400 4316 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Fen1P39749 Zfp236-202ENSMUST00000182122 6059 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Zfp41-204ENSMUST00000161785 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Bcar1-203ENSMUST00000212349 3116 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Slc9a3-203ENSMUST00000221703 5118 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Fen1P39749 Slc25a42-202ENSMUST00000110127 3196 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Fen1P39749 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Sec22b-201ENSMUST00000029476 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Klhl6-201ENSMUST00000058839 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Zscan30-202ENSMUST00000224144 1458 ntBASIC12.04□□□□□ -0.48
Fen1P39749 Gpr158-201ENSMUST00000055946 7171 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Col9a1-202ENSMUST00000088349 3059 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Dtx3l-202ENSMUST00000114885 2648 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Aldoc-202ENSMUST00000102478 1700 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Zbtb21-201ENSMUST00000052089 5410 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC12.04□□□□□ -0.48
Fen1P39749 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC12.04□□□□□ -0.48
Fen1P39749 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC12.04□□□□□ -0.48
Fen1P39749 Gm5637-201ENSMUST00000153890 1119 ntBASIC12.04□□□□□ -0.48
Fen1P39749 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Gm24196-201ENSMUST00000179161 110 ntBASIC12.04□□□□□ -0.48
Fen1P39749 Gm29649-201ENSMUST00000185649 419 ntBASIC12.04□□□□□ -0.48
Fen1P39749 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC12.04□□□□□ -0.48
Fen1P39749 Gm10012-201ENSMUST00000078252 192 ntBASIC12.04□□□□□ -0.48
Fen1P39749 Gm22058-201ENSMUST00000083393 310 ntBASIC12.04□□□□□ -0.48
Fen1P39749 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Fen1P39749 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Sox9-201ENSMUST00000000579 4135 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Trub2-201ENSMUST00000048044 3408 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Trim45-201ENSMUST00000037409 4612 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC12.04□□□□□ -0.48
Fen1P39749 Mlc1-201ENSMUST00000042594 2783 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Gm20425-201ENSMUST00000166836 3028 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Fen1P39749 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Mb21d1-202ENSMUST00000070742 4049 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 S100pbp-203ENSMUST00000106059 4084 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Cad-211ENSMUST00000202795 6559 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Pcdhb17-201ENSMUST00000053856 4660 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Fen1P39749 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Fen1P39749 Sel1l-204ENSMUST00000167466 5544 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Fen1P39749 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Fen1P39749 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Fen1P39749 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Fen1P39749 Myo18a-224ENSMUST00000172303 6339 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Fen1P39749 Gm2128-201ENSMUST00000108009 2560 ntBASIC12.03□□□□□ -0.48
Fen1P39749 Col6a6-203ENSMUST00000166431 7098 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Fen1P39749 Gm12502-201ENSMUST00000120197 444 ntBASIC12.03□□□□□ -0.48
Fen1P39749 Gm7029-201ENSMUST00000173226 450 ntBASIC12.03□□□□□ -0.48
Fen1P39749 Gm45784-201ENSMUST00000188360 142 ntBASIC12.03□□□□□ -0.48
Fen1P39749 Gm18304-201ENSMUST00000189162 546 ntBASIC12.03□□□□□ -0.48
Fen1P39749 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC12.03□□□□□ -0.48
Fen1P39749 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC12.03□□□□□ -0.48
Fen1P39749 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Fen1P39749 Gm9299-201ENSMUST00000206392 1140 ntBASIC12.03□□□□□ -0.48
Fen1P39749 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC12.03□□□□□ -0.48
Fen1P39749 Gm5904-201ENSMUST00000210286 865 ntBASIC12.03□□□□□ -0.48
Fen1P39749 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC12.03□□□□□ -0.48
Fen1P39749 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Fen1P39749 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms