Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Frmpd1-202ENSMUST00000107804 5241 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Urad-201ENSMUST00000100433 766 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Gm5419-201ENSMUST00000119301 527 ntBASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Gm15573-201ENSMUST00000119487 540 ntBASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Gm12029-201ENSMUST00000120073 832 ntBASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Gm14665-201ENSMUST00000122294 557 ntBASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Gm17391-201ENSMUST00000171036 126 ntBASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Gm20535-201ENSMUST00000173157 1268 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Gm18893-201ENSMUST00000198416 943 ntBASIC13.01□□□□□ -0.33
Trim54Q9ERP3 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Gm43916-201ENSMUST00000205062 967 ntBASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Fam168a-204ENSMUST00000207564 1083 ntTSL 5 BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Gm8285-201ENSMUST00000208293 759 ntBASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Gm7395-201ENSMUST00000216059 1045 ntBASIC13.01□□□□□ -0.33
Trim54Q9ERP3 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Tas2r126-201ENSMUST00000059534 930 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Gm9785-201ENSMUST00000062642 1006 ntBASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Gm44999-201ENSMUST00000207456 1493 ntBASIC13.01□□□□□ -0.33
Trim54Q9ERP3 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 AC160405.1-201ENSMUST00000218207 1545 ntBASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Gm43267-201ENSMUST00000199664 1796 ntBASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Mgll-201ENSMUST00000089449 3867 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim54Q9ERP3 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Trim54Q9ERP3 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC13□□□□□ -0.33
Trim54Q9ERP3 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Trim54Q9ERP3 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim54Q9ERP3 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC13□□□□□ -0.33
Trim54Q9ERP3 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC13□□□□□ -0.33
Trim54Q9ERP3 AC125108.1-201ENSMUST00000218986 2330 ntBASIC13□□□□□ -0.33
Trim54Q9ERP3 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim54Q9ERP3 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC13□□□□□ -0.33
Trim54Q9ERP3 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim54Q9ERP3 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim54Q9ERP3 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trim54Q9ERP3 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Trim54Q9ERP3 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Trim54Q9ERP3 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Trim54Q9ERP3 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim54Q9ERP3 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Trim54Q9ERP3 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Trim54Q9ERP3 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trim54Q9ERP3 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim54Q9ERP3 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC13□□□□□ -0.33
Trim54Q9ERP3 Gm4131-201ENSMUST00000186010 1264 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Trim54Q9ERP3 Gm44545-201ENSMUST00000208262 746 ntBASIC13□□□□□ -0.33
Trim54Q9ERP3 Gm4797-201ENSMUST00000219075 1283 ntBASIC13□□□□□ -0.33
Trim54Q9ERP3 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trim54Q9ERP3 CT030637.1-201ENSMUST00000228016 669 ntBASIC13□□□□□ -0.33
Trim54Q9ERP3 Nceh1-202ENSMUST00000091284 830 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trim54Q9ERP3 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC13□□□□□ -0.33
Trim54Q9ERP3 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC13□□□□□ -0.33
Trim54Q9ERP3 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim54Q9ERP3 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Trim54Q9ERP3 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Trim54Q9ERP3 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Trim54Q9ERP3 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim54Q9ERP3 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim54Q9ERP3 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Gm9279-201ENSMUST00000223175 1606 ntBASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 F10-205ENSMUST00000152034 1449 ntTSL 5 BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Tnk2os-201ENSMUST00000141256 1392 ntTSL 2 BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Gm13888-201ENSMUST00000119148 422 ntBASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Mup-ps26-201ENSMUST00000121751 202 ntBASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms