Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Gm43061-201ENSMUST00000198850 2241 ntBASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 AC126257.1-201ENSMUST00000213195 1536 ntBASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Sf3b1Q99NB9 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Sdad1-201ENSMUST00000031364 5020 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Gm10152-201ENSMUST00000193475 1344 ntBASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Gm19459-201ENSMUST00000176240 835 ntBASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Gm44126-201ENSMUST00000204831 514 ntBASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Tepp-207ENSMUST00000212056 613 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 AC141438.2-201ENSMUST00000215068 271 ntBASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Gm9797-202ENSMUST00000218003 294 ntBASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 AC154849.4-201ENSMUST00000224868 365 ntBASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 AC135114.1-201ENSMUST00000228682 270 ntBASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Pf4-201ENSMUST00000031320 588 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Gm37513-201ENSMUST00000194830 2268 ntBASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Gm38378-201ENSMUST00000195153 2268 ntBASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
Sf3b1Q99NB9 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Sparc-209ENSMUST00000216313 1304 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Gm14235-201ENSMUST00000142445 366 ntTSL 3 BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Gm11290-203ENSMUST00000147811 314 ntTSL 5 BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Gm42817-201ENSMUST00000198962 607 ntTSL 3 BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Mir7686-201ENSMUST00000200604 57 ntBASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Ptprr-204ENSMUST00000128399 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC12.72□□□□□ -0.37
Sf3b1Q99NB9 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC12.71□□□□□ -0.37
Sf3b1Q99NB9 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Sf3b1Q99NB9 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sf3b1Q99NB9 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sf3b1Q99NB9 Gm37131-201ENSMUST00000192502 1561 ntBASIC12.71□□□□□ -0.37
Sf3b1Q99NB9 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sf3b1Q99NB9 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sf3b1Q99NB9 Gm6397-201ENSMUST00000161973 1069 ntBASIC12.71□□□□□ -0.37
Sf3b1Q99NB9 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Sf3b1Q99NB9 Mir6546-201ENSMUST00000184460 62 ntBASIC12.71□□□□□ -0.37
Sf3b1Q99NB9 Gm38228-201ENSMUST00000193169 1293 ntBASIC12.71□□□□□ -0.37
Sf3b1Q99NB9 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 43.6 ms