Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col11a1Q61245 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col11a1Q61245 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC13.16□□□□□ -0.3
Col11a1Q61245 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col11a1Q61245 Gm44913-201ENSMUST00000208060 2990 ntBASIC13.16□□□□□ -0.3
Col11a1Q61245 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Col11a1Q61245 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC13.16□□□□□ -0.3
Col11a1Q61245 Gm24279-201ENSMUST00000104236 131 ntBASIC13.16□□□□□ -0.3
Col11a1Q61245 Gm13422-201ENSMUST00000118834 504 ntBASIC13.16□□□□□ -0.3
Col11a1Q61245 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col11a1Q61245 Rpl41-201ENSMUST00000176010 582 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col11a1Q61245 Rpl41-204ENSMUST00000176906 509 ntAPPRIS ALT2 TSL 3 BASIC13.16□□□□□ -0.3
Col11a1Q61245 Gm37284-201ENSMUST00000193607 539 ntBASIC13.16□□□□□ -0.3
Col11a1Q61245 Ighv1-60-201ENSMUST00000195816 405 ntBASIC13.16□□□□□ -0.3
Col11a1Q61245 Gm8579-201ENSMUST00000201943 733 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col11a1Q61245 4933402C05Rik-201ENSMUST00000208189 1035 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col11a1Q61245 Gm7904-201ENSMUST00000217049 465 ntBASIC13.16□□□□□ -0.3
Col11a1Q61245 Myl6-211ENSMUST00000219236 692 ntTSL 2 BASIC13.16□□□□□ -0.3
Col11a1Q61245 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC13.15□□□□□ -0.3
Col11a1Q61245 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Col11a1Q61245 Nrf1-220ENSMUST00000170535 1527 ntTSL 5 BASIC13.15□□□□□ -0.3
Col11a1Q61245 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Col11a1Q61245 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col11a1Q61245 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Col11a1Q61245 B4galt4-201ENSMUST00000023482 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col11a1Q61245 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col11a1Q61245 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC13.15□□□□□ -0.3
Col11a1Q61245 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col11a1Q61245 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col11a1Q61245 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col11a1Q61245 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Col11a1Q61245 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col11a1Q61245 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col11a1Q61245 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col11a1Q61245 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Col11a1Q61245 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col11a1Q61245 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Col11a1Q61245 Gm13284-201ENSMUST00000121020 547 ntBASIC13.15□□□□□ -0.3
Col11a1Q61245 Gm12052-201ENSMUST00000142151 933 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Col11a1Q61245 Gm25226-201ENSMUST00000158198 123 ntBASIC13.15□□□□□ -0.3
Col11a1Q61245 Higd1c-202ENSMUST00000177211 555 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col11a1Q61245 Gm7985-201ENSMUST00000183329 981 ntBASIC13.15□□□□□ -0.3
Col11a1Q61245 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC13.15□□□□□ -0.3
Col11a1Q61245 Gm37365-201ENSMUST00000193109 409 ntBASIC13.15□□□□□ -0.3
Col11a1Q61245 Apoa5-205ENSMUST00000215187 495 ntTSL 5 BASIC13.15□□□□□ -0.3
Col11a1Q61245 Gm6331-201ENSMUST00000217890 450 ntBASIC13.15□□□□□ -0.3
Col11a1Q61245 AC115304.2-201ENSMUST00000226399 332 ntBASIC13.15□□□□□ -0.3
Col11a1Q61245 AC105408.1-201ENSMUST00000227771 802 ntBASIC13.15□□□□□ -0.3
Col11a1Q61245 Eif4ebp3-201ENSMUST00000036765 744 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col11a1Q61245 Olfr538-201ENSMUST00000084457 933 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Col11a1Q61245 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC13.15□□□□□ -0.3
Col11a1Q61245 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC13.15□□□□□ -0.3
Col11a1Q61245 Gm11413-201ENSMUST00000155822 1461 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Col11a1Q61245 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Col11a1Q61245 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col11a1Q61245 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col11a1Q61245 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col11a1Q61245 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.31
Col11a1Q61245 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.31
Col11a1Q61245 Fbxo15-201ENSMUST00000037718 1437 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.31
Col11a1Q61245 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Col11a1Q61245 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col11a1Q61245 5830437K03Rik-201ENSMUST00000199219 1379 ntBASIC13.14□□□□□ -0.31
Col11a1Q61245 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Col11a1Q61245 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col11a1Q61245 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
Col11a1Q61245 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Col11a1Q61245 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC13.14□□□□□ -0.31
Col11a1Q61245 Slc24a5-201ENSMUST00000070353 1954 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col11a1Q61245 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col11a1Q61245 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col11a1Q61245 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Col11a1Q61245 Gm12337-201ENSMUST00000119634 400 ntBASIC13.14□□□□□ -0.31
Col11a1Q61245 Alg12-204ENSMUST00000162183 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col11a1Q61245 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC13.14□□□□□ -0.31
Col11a1Q61245 Psca-201ENSMUST00000023265 860 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col11a1Q61245 Mrps11-201ENSMUST00000032840 1056 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col11a1Q61245 Iqcf1-201ENSMUST00000085114 613 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col11a1Q61245 Gm10580-201ENSMUST00000097985 396 ntBASIC13.14□□□□□ -0.31
Col11a1Q61245 Gm10582-201ENSMUST00000097987 396 ntBASIC13.14□□□□□ -0.31
Col11a1Q61245 Gm10583-201ENSMUST00000097988 396 ntBASIC13.14□□□□□ -0.31
Col11a1Q61245 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Col11a1Q61245 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col11a1Q61245 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col11a1Q61245 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col11a1Q61245 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col11a1Q61245 Gm1840-201ENSMUST00000051687 1432 ntBASIC13.14□□□□□ -0.31
Col11a1Q61245 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Col11a1Q61245 Lgals4-201ENSMUST00000066723 1384 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col11a1Q61245 Vmn1r38-201ENSMUST00000226457 3462 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Col11a1Q61245 4930484H19Rik-201ENSMUST00000218870 1737 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Col11a1Q61245 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Col11a1Q61245 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC13.14□□□□□ -0.31
Col11a1Q61245 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Col11a1Q61245 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Col11a1Q61245 Mpv17-202ENSMUST00000200744 1653 ntTSL 2 BASIC13.14□□□□□ -0.31
Col11a1Q61245 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Col11a1Q61245 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col11a1Q61245 AC022682.1-201ENSMUST00000224624 2023 ntBASIC13.13□□□□□ -0.31
Col11a1Q61245 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 84 ms