Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Gm8420-201ENSMUST00000097103 598 ntBASIC11.24□□□□□ -0.61
Trim40Q3UWA4 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim40Q3UWA4 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim40Q3UWA4 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC11.24□□□□□ -0.61
Trim40Q3UWA4 Kif2a-202ENSMUST00000117423 2023 ntTSL 5 BASIC11.24□□□□□ -0.61
Trim40Q3UWA4 Tie1-201ENSMUST00000047421 4091 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim40Q3UWA4 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Trim40Q3UWA4 Dao-202ENSMUST00000112292 2057 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim40Q3UWA4 AC154404.1-201ENSMUST00000223601 2077 ntBASIC11.24□□□□□ -0.61
Trim40Q3UWA4 Wdr43-201ENSMUST00000047086 3450 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim40Q3UWA4 Rapgef2-206ENSMUST00000195708 6964 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Trim40Q3UWA4 Trip4-202ENSMUST00000119245 4211 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim40Q3UWA4 Dtl-201ENSMUST00000027933 4212 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim40Q3UWA4 Kcnma1-205ENSMUST00000145596 12094 ntAPPRIS ALT2 BASIC11.24□□□□□ -0.61
Trim40Q3UWA4 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC11.24□□□□□ -0.61
Trim40Q3UWA4 Gm43773-201ENSMUST00000198548 2162 ntBASIC11.24□□□□□ -0.61
Trim40Q3UWA4 Sell-201ENSMUST00000027871 2199 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim40Q3UWA4 Mmel1-202ENSMUST00000080559 2926 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Trim40Q3UWA4 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Trim40Q3UWA4 Wt1os-203ENSMUST00000172701 2960 ntTSL 2 BASIC11.24□□□□□ -0.61
Trim40Q3UWA4 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Trim40Q3UWA4 Tapbpl-201ENSMUST00000043422 2352 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Trim40Q3UWA4 Tex2-202ENSMUST00000103070 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Tmem140-201ENSMUST00000074949 2614 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Gm7642-201ENSMUST00000216345 1809 ntBASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Trim45-201ENSMUST00000037409 4612 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Ces3b-201ENSMUST00000074403 1907 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Bahcc1-201ENSMUST00000044985 10726 ntAPPRIS P3 TSL 5 BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Kyat1-206ENSMUST00000113663 2026 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 6030407O03Rik-201ENSMUST00000189514 2094 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Cyp11b1-201ENSMUST00000170259 3165 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Adgrl3-210ENSMUST00000119788 5394 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Hap1-202ENSMUST00000138603 3316 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Map4-203ENSMUST00000163979 3320 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Wnt7b-203ENSMUST00000167968 3408 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Acat1-201ENSMUST00000034547 3405 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Aldh16a1-206ENSMUST00000209963 3537 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Gm12203-201ENSMUST00000118235 598 ntBASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Gm15172-201ENSMUST00000118945 1046 ntBASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Gm12209-201ENSMUST00000120089 596 ntBASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Gm14928-201ENSMUST00000120198 477 ntBASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Gm5637-201ENSMUST00000153890 1119 ntBASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Gm32025-201ENSMUST00000217960 307 ntBASIC11.23□□□□□ -0.61
Trim40Q3UWA4 AC154239.3-201ENSMUST00000226933 674 ntBASIC11.23□□□□□ -0.61
Trim40Q3UWA4 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Gm6180-201ENSMUST00000065243 498 ntBASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Gm10146-201ENSMUST00000072739 309 ntBASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Ppp4r1-201ENSMUST00000073104 3850 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Rassf4-201ENSMUST00000035842 6460 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Klhl22-208ENSMUST00000165790 2616 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Igsf1-204ENSMUST00000114893 2671 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Gm45342-201ENSMUST00000210903 1363 ntBASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Galr1-201ENSMUST00000065224 2871 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Zfp773-201ENSMUST00000032622 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Enox1-203ENSMUST00000227662 3064 ntAPPRIS ALT2 BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Nnt-201ENSMUST00000069902 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Lig1-211ENSMUST00000177588 3174 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 4933406M09Rik-201ENSMUST00000162187 1768 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Zfp280d-205ENSMUST00000183468 1834 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Slit2-216ENSMUST00000174313 7734 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Mob3b-201ENSMUST00000102975 6030 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Btrc-209ENSMUST00000224478 2194 ntBASIC11.23□□□□□ -0.61
Trim40Q3UWA4 AC124577.2-201ENSMUST00000217413 2420 ntBASIC11.23□□□□□ -0.61
Trim40Q3UWA4 Brd3-201ENSMUST00000028282 5419 ntAPPRIS P3 TSL 5 BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Tbc1d14-202ENSMUST00000124036 2765 ntTSL 5 BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Nnt-203ENSMUST00000109204 3198 ntTSL 5 BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Fli1-201ENSMUST00000016231 3318 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Slc12a9-201ENSMUST00000039991 3330 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Fmnl1-202ENSMUST00000042286 3806 ntAPPRIS P4 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Nod1-201ENSMUST00000060655 4315 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Pitpnc1-202ENSMUST00000103064 6329 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Nexmif-203ENSMUST00000118314 11476 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Rsc1a1-201ENSMUST00000105782 1749 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Sparc-202ENSMUST00000108858 2115 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC11.22□□□□□ -0.61
Trim40Q3UWA4 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Ptgr2-207ENSMUST00000146377 2073 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC11.22□□□□□ -0.61
Trim40Q3UWA4 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC11.22□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms