Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC19.12■□□□□ 0.65
Cdc40Q9DC48 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cdc40Q9DC48 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC19.12■□□□□ 0.65
Cdc40Q9DC48 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cdc40Q9DC48 Gm6277-202ENSMUST00000224036 2779 ntBASIC19.12■□□□□ 0.65
Cdc40Q9DC48 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cdc40Q9DC48 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cdc40Q9DC48 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Cdc40Q9DC48 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Cdc40Q9DC48 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Cdc40Q9DC48 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC19.11■□□□□ 0.65
Cdc40Q9DC48 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Cdc40Q9DC48 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Cdc40Q9DC48 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Cdc40Q9DC48 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Cdc40Q9DC48 Gm10399-202ENSMUST00000202768 748 ntBASIC19.1■□□□□ 0.65
Cdc40Q9DC48 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Cdc40Q9DC48 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Cdc40Q9DC48 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Cdc40Q9DC48 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Cdc40Q9DC48 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Cdc40Q9DC48 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Cdc40Q9DC48 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Cdc40Q9DC48 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Cdc40Q9DC48 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Cdc40Q9DC48 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Cdc40Q9DC48 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Cdc40Q9DC48 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Cdc40Q9DC48 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Cdc40Q9DC48 Gm22238-201ENSMUST00000175222 88 ntBASIC19.08■□□□□ 0.64
Cdc40Q9DC48 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC19.08■□□□□ 0.64
Cdc40Q9DC48 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Cdc40Q9DC48 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Cdc40Q9DC48 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Cdc40Q9DC48 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Cdc40Q9DC48 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
Cdc40Q9DC48 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cdc40Q9DC48 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Cdc40Q9DC48 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Cdc40Q9DC48 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Cdc40Q9DC48 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cdc40Q9DC48 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC19.07■□□□□ 0.64
Cdc40Q9DC48 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Cdc40Q9DC48 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cdc40Q9DC48 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Cdc40Q9DC48 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cdc40Q9DC48 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Cdc40Q9DC48 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Cdc40Q9DC48 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC19.06■□□□□ 0.64
Cdc40Q9DC48 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Cdc40Q9DC48 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC19.06■□□□□ 0.64
Cdc40Q9DC48 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
Cdc40Q9DC48 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Cdc40Q9DC48 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Cdc40Q9DC48 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
Cdc40Q9DC48 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Cdc40Q9DC48 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Cdc40Q9DC48 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
Cdc40Q9DC48 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Cdc40Q9DC48 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Cdc40Q9DC48 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Cdc40Q9DC48 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Cdc40Q9DC48 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Cdc40Q9DC48 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
Cdc40Q9DC48 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
Cdc40Q9DC48 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Cdc40Q9DC48 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Cdc40Q9DC48 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Cdc40Q9DC48 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Cdc40Q9DC48 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Cdc40Q9DC48 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC19.05■□□□□ 0.64
Cdc40Q9DC48 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Cdc40Q9DC48 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Cdc40Q9DC48 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Cdc40Q9DC48 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Cdc40Q9DC48 Gm32051-202ENSMUST00000197905 2385 ntBASIC19.04■□□□□ 0.64
Cdc40Q9DC48 AC158990.1-201ENSMUST00000221450 2016 ntBASIC19.04■□□□□ 0.64
Cdc40Q9DC48 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
Cdc40Q9DC48 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Cdc40Q9DC48 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Cdc40Q9DC48 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
Cdc40Q9DC48 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC19.03■□□□□ 0.64
Cdc40Q9DC48 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Cdc40Q9DC48 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Cdc40Q9DC48 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Cdc40Q9DC48 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Cdc40Q9DC48 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
Cdc40Q9DC48 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Cdc40Q9DC48 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Cdc40Q9DC48 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
Cdc40Q9DC48 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Cdc40Q9DC48 Gm9847-201ENSMUST00000052528 599 ntBASIC19.02■□□□□ 0.64
Cdc40Q9DC48 Gm13241-201ENSMUST00000094493 780 ntBASIC19.02■□□□□ 0.64
Cdc40Q9DC48 Gm43034-201ENSMUST00000198678 1364 ntBASIC19.02■□□□□ 0.64
Cdc40Q9DC48 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Cdc40Q9DC48 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Cdc40Q9DC48 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Cdc40Q9DC48 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Cdc40Q9DC48 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Cdc40Q9DC48 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms