Protein–RNA interactions for Protein: Q9DB34

Chmp2a, Charged multivesicular body protein 2a, mousemouse

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp2aQ9DB34 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
Chmp2aQ9DB34 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC21.52■■□□□ 1.04
Chmp2aQ9DB34 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Chmp2aQ9DB34 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Chmp2aQ9DB34 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC21.52■■□□□ 1.04
Chmp2aQ9DB34 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Chmp2aQ9DB34 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Chmp2aQ9DB34 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Chmp2aQ9DB34 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Chmp2aQ9DB34 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC21.51■■□□□ 1.03
Chmp2aQ9DB34 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Chmp2aQ9DB34 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Chmp2aQ9DB34 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Chmp2aQ9DB34 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC21.5■■□□□ 1.03
Chmp2aQ9DB34 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Chmp2aQ9DB34 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC21.5■■□□□ 1.03
Chmp2aQ9DB34 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC21.5■■□□□ 1.03
Chmp2aQ9DB34 AC164883.3-201ENSMUST00000227396 1774 ntBASIC21.49■■□□□ 1.03
Chmp2aQ9DB34 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
Chmp2aQ9DB34 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Chmp2aQ9DB34 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Chmp2aQ9DB34 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
Chmp2aQ9DB34 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Chmp2aQ9DB34 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Chmp2aQ9DB34 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Chmp2aQ9DB34 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Chmp2aQ9DB34 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Chmp2aQ9DB34 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC21.47■■□□□ 1.03
Chmp2aQ9DB34 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Chmp2aQ9DB34 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC21.47■■□□□ 1.03
Chmp2aQ9DB34 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Chmp2aQ9DB34 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC21.47■■□□□ 1.03
Chmp2aQ9DB34 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC21.47■■□□□ 1.03
Chmp2aQ9DB34 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Chmp2aQ9DB34 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Chmp2aQ9DB34 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Chmp2aQ9DB34 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
Chmp2aQ9DB34 Gm43403-201ENSMUST00000198011 1786 ntBASIC21.46■■□□□ 1.03
Chmp2aQ9DB34 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC21.46■■□□□ 1.03
Chmp2aQ9DB34 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
Chmp2aQ9DB34 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC21.46■■□□□ 1.03
Chmp2aQ9DB34 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Chmp2aQ9DB34 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Chmp2aQ9DB34 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Chmp2aQ9DB34 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
Chmp2aQ9DB34 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Chmp2aQ9DB34 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Chmp2aQ9DB34 Gm4430-201ENSMUST00000192413 1943 ntBASIC21.45■■□□□ 1.02
Chmp2aQ9DB34 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Chmp2aQ9DB34 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC21.45■■□□□ 1.02
Chmp2aQ9DB34 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC21.44■■□□□ 1.02
Chmp2aQ9DB34 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Chmp2aQ9DB34 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Chmp2aQ9DB34 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Chmp2aQ9DB34 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Chmp2aQ9DB34 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Chmp2aQ9DB34 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Chmp2aQ9DB34 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Chmp2aQ9DB34 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Chmp2aQ9DB34 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC21.43■■□□□ 1.02
Chmp2aQ9DB34 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Chmp2aQ9DB34 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
Chmp2aQ9DB34 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC21.43■■□□□ 1.02
Chmp2aQ9DB34 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Chmp2aQ9DB34 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC21.43■■□□□ 1.02
Chmp2aQ9DB34 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Chmp2aQ9DB34 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Chmp2aQ9DB34 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Chmp2aQ9DB34 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
Chmp2aQ9DB34 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Chmp2aQ9DB34 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Chmp2aQ9DB34 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Chmp2aQ9DB34 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
Chmp2aQ9DB34 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC21.42■■□□□ 1.02
Chmp2aQ9DB34 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
Chmp2aQ9DB34 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Chmp2aQ9DB34 Kdm3b-204ENSMUST00000224715 2032 ntBASIC21.41■■□□□ 1.02
Chmp2aQ9DB34 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Chmp2aQ9DB34 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Chmp2aQ9DB34 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Chmp2aQ9DB34 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Chmp2aQ9DB34 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Chmp2aQ9DB34 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC21.41■■□□□ 1.02
Chmp2aQ9DB34 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Chmp2aQ9DB34 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
Chmp2aQ9DB34 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Chmp2aQ9DB34 Gm12504-201ENSMUST00000120860 2231 ntBASIC21.4■■□□□ 1.02
Chmp2aQ9DB34 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC21.4■■□□□ 1.02
Chmp2aQ9DB34 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Chmp2aQ9DB34 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Chmp2aQ9DB34 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC21.4■■□□□ 1.02
Chmp2aQ9DB34 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Chmp2aQ9DB34 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Chmp2aQ9DB34 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC21.39■■□□□ 1.02
Chmp2aQ9DB34 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
Chmp2aQ9DB34 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Chmp2aQ9DB34 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.02
Chmp2aQ9DB34 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Chmp2aQ9DB34 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Chmp2aQ9DB34 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms