Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ccdc40Q8BI79 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
Ccdc40Q8BI79 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ccdc40Q8BI79 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ccdc40Q8BI79 Gm32051-202ENSMUST00000197905 2385 ntBASIC21.4■■□□□ 1.02
Ccdc40Q8BI79 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ccdc40Q8BI79 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Ccdc40Q8BI79 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Ccdc40Q8BI79 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ccdc40Q8BI79 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
Ccdc40Q8BI79 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Ccdc40Q8BI79 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Ccdc40Q8BI79 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ccdc40Q8BI79 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ccdc40Q8BI79 AC158990.1-201ENSMUST00000221450 2016 ntBASIC21.39■■□□□ 1.02
Ccdc40Q8BI79 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.02
Ccdc40Q8BI79 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.02
Ccdc40Q8BI79 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
Ccdc40Q8BI79 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
Ccdc40Q8BI79 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Ccdc40Q8BI79 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.01
Ccdc40Q8BI79 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ccdc40Q8BI79 AC164883.3-201ENSMUST00000227396 1774 ntBASIC21.38■■□□□ 1.01
Ccdc40Q8BI79 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ccdc40Q8BI79 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ccdc40Q8BI79 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ccdc40Q8BI79 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ccdc40Q8BI79 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ccdc40Q8BI79 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
Ccdc40Q8BI79 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ccdc40Q8BI79 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Ccdc40Q8BI79 Gm43403-201ENSMUST00000198011 1786 ntBASIC21.38■■□□□ 1.01
Ccdc40Q8BI79 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Ccdc40Q8BI79 Gm13238-201ENSMUST00000117655 780 ntBASIC21.37■■□□□ 1.01
Ccdc40Q8BI79 Gm16464-201ENSMUST00000117815 1095 ntBASIC21.37■■□□□ 1.01
Ccdc40Q8BI79 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Ccdc40Q8BI79 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC21.37■■□□□ 1.01
Ccdc40Q8BI79 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ccdc40Q8BI79 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ccdc40Q8BI79 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Ccdc40Q8BI79 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ccdc40Q8BI79 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Ccdc40Q8BI79 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Ccdc40Q8BI79 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Ccdc40Q8BI79 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC21.35■■□□□ 1.01
Ccdc40Q8BI79 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ccdc40Q8BI79 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ccdc40Q8BI79 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ccdc40Q8BI79 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ccdc40Q8BI79 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ccdc40Q8BI79 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ccdc40Q8BI79 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Ccdc40Q8BI79 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC21.34■■□□□ 1.01
Ccdc40Q8BI79 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
Ccdc40Q8BI79 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ccdc40Q8BI79 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ccdc40Q8BI79 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Ccdc40Q8BI79 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
Ccdc40Q8BI79 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC21.33■■□□□ 1.01
Ccdc40Q8BI79 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
Ccdc40Q8BI79 Gm43182-201ENSMUST00000199476 2528 ntBASIC21.33■■□□□ 1
Ccdc40Q8BI79 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc40Q8BI79 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc40Q8BI79 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ccdc40Q8BI79 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC21.32■■□□□ 1
Ccdc40Q8BI79 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc40Q8BI79 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc40Q8BI79 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ccdc40Q8BI79 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc40Q8BI79 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc40Q8BI79 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC21.32■■□□□ 1
Ccdc40Q8BI79 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc40Q8BI79 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Ccdc40Q8BI79 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Ccdc40Q8BI79 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ccdc40Q8BI79 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
Ccdc40Q8BI79 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Ccdc40Q8BI79 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ccdc40Q8BI79 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ccdc40Q8BI79 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Ccdc40Q8BI79 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Ccdc40Q8BI79 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Ccdc40Q8BI79 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ccdc40Q8BI79 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Ccdc40Q8BI79 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ccdc40Q8BI79 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC21.29■■□□□ 1
Ccdc40Q8BI79 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Ccdc40Q8BI79 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC21.29■■□□□ 1
Ccdc40Q8BI79 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ccdc40Q8BI79 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Ccdc40Q8BI79 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC21.28■■□□□ 1
Ccdc40Q8BI79 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC21.28■■□□□ 1
Ccdc40Q8BI79 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
Ccdc40Q8BI79 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC21.28■■□□□ 1
Ccdc40Q8BI79 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ccdc40Q8BI79 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Ccdc40Q8BI79 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ccdc40Q8BI79 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ccdc40Q8BI79 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC21.27■■□□□ 1
Ccdc40Q8BI79 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 13.4 ms