Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC24.56■■□□□ 1.52
Trim56Q80VI1 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC24.56■■□□□ 1.52
Trim56Q80VI1 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Trim56Q80VI1 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Trim56Q80VI1 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Trim56Q80VI1 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Trim56Q80VI1 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Trim56Q80VI1 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Trim56Q80VI1 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
Trim56Q80VI1 Gm12504-201ENSMUST00000120860 2231 ntBASIC24.55■■□□□ 1.52
Trim56Q80VI1 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
Trim56Q80VI1 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC24.55■■□□□ 1.52
Trim56Q80VI1 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Trim56Q80VI1 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
Trim56Q80VI1 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC24.54■■□□□ 1.52
Trim56Q80VI1 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC24.54■■□□□ 1.52
Trim56Q80VI1 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Trim56Q80VI1 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC24.54■■□□□ 1.52
Trim56Q80VI1 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Trim56Q80VI1 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Trim56Q80VI1 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Trim56Q80VI1 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Trim56Q80VI1 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC24.53■■□□□ 1.52
Trim56Q80VI1 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC24.52■■□□□ 1.52
Trim56Q80VI1 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Trim56Q80VI1 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Trim56Q80VI1 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Trim56Q80VI1 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Trim56Q80VI1 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Trim56Q80VI1 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Trim56Q80VI1 Gm44949-201ENSMUST00000206423 1450 ntBASIC24.51■■□□□ 1.51
Trim56Q80VI1 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Trim56Q80VI1 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC24.51■■□□□ 1.51
Trim56Q80VI1 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC24.51■■□□□ 1.51
Trim56Q80VI1 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
Trim56Q80VI1 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC24.51■■□□□ 1.51
Trim56Q80VI1 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC24.51■■□□□ 1.51
Trim56Q80VI1 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Trim56Q80VI1 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
Trim56Q80VI1 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Trim56Q80VI1 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
Trim56Q80VI1 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC24.49■■□□□ 1.51
Trim56Q80VI1 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Trim56Q80VI1 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Trim56Q80VI1 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Trim56Q80VI1 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC24.48■■□□□ 1.51
Trim56Q80VI1 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
Trim56Q80VI1 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC24.48■■□□□ 1.51
Trim56Q80VI1 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC24.48■■□□□ 1.51
Trim56Q80VI1 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC24.48■■□□□ 1.51
Trim56Q80VI1 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC24.48■■□□□ 1.51
Trim56Q80VI1 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Trim56Q80VI1 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC24.48■■□□□ 1.51
Trim56Q80VI1 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Trim56Q80VI1 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Trim56Q80VI1 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Trim56Q80VI1 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Trim56Q80VI1 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC24.47■■□□□ 1.51
Trim56Q80VI1 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC24.47■■□□□ 1.51
Trim56Q80VI1 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Trim56Q80VI1 Gm9870-201ENSMUST00000063874 645 ntBASIC24.47■■□□□ 1.51
Trim56Q80VI1 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC24.47■■□□□ 1.51
Trim56Q80VI1 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Trim56Q80VI1 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Trim56Q80VI1 Gm13042-201ENSMUST00000119244 1955 ntBASIC24.46■■□□□ 1.51
Trim56Q80VI1 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
Trim56Q80VI1 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
Trim56Q80VI1 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Trim56Q80VI1 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Trim56Q80VI1 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
Trim56Q80VI1 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
Trim56Q80VI1 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Trim56Q80VI1 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Trim56Q80VI1 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Trim56Q80VI1 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Trim56Q80VI1 Gm5913-201ENSMUST00000119397 1399 ntBASIC24.44■■□□□ 1.5
Trim56Q80VI1 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Trim56Q80VI1 Gm7143-201ENSMUST00000222811 859 ntBASIC24.44■■□□□ 1.5
Trim56Q80VI1 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Trim56Q80VI1 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Trim56Q80VI1 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Trim56Q80VI1 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Trim56Q80VI1 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
Trim56Q80VI1 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC24.43■■□□□ 1.5
Trim56Q80VI1 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC24.43■■□□□ 1.5
Trim56Q80VI1 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC24.43■■□□□ 1.5
Trim56Q80VI1 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
Trim56Q80VI1 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Trim56Q80VI1 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC24.43■■□□□ 1.5
Trim56Q80VI1 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Trim56Q80VI1 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
Trim56Q80VI1 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC24.42■■□□□ 1.5
Trim56Q80VI1 Gm12922-201ENSMUST00000120626 809 ntBASIC24.42■■□□□ 1.5
Trim56Q80VI1 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
Trim56Q80VI1 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Trim56Q80VI1 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
Trim56Q80VI1 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC24.41■■□□□ 1.5
Trim56Q80VI1 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
Trim56Q80VI1 Gm21956-201ENSMUST00000179946 522 ntBASIC24.41■■□□□ 1.5
Trim56Q80VI1 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms