Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Usf1Q61069 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usf1Q61069 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usf1Q61069 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Usf1Q61069 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC18.97■□□□□ 0.63
Usf1Q61069 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC18.96■□□□□ 0.63
Usf1Q61069 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Usf1Q61069 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Usf1Q61069 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Usf1Q61069 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Usf1Q61069 Gm42642-201ENSMUST00000200683 355 ntBASIC18.95■□□□□ 0.62
Usf1Q61069 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Usf1Q61069 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Usf1Q61069 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
Usf1Q61069 Gm6085-201ENSMUST00000182774 1470 ntBASIC18.95■□□□□ 0.62
Usf1Q61069 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Usf1Q61069 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Usf1Q61069 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC18.95■□□□□ 0.62
Usf1Q61069 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Usf1Q61069 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Usf1Q61069 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Usf1Q61069 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Usf1Q61069 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Usf1Q61069 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Usf1Q61069 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
Usf1Q61069 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Usf1Q61069 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Usf1Q61069 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC18.93■□□□□ 0.62
Usf1Q61069 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Usf1Q61069 Spcs1-204ENSMUST00000226782 949 ntBASIC18.93■□□□□ 0.62
Usf1Q61069 AC112142.1-201ENSMUST00000228796 918 ntBASIC18.93■□□□□ 0.62
Usf1Q61069 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Usf1Q61069 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Usf1Q61069 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Usf1Q61069 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC18.92■□□□□ 0.62
Usf1Q61069 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Usf1Q61069 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Usf1Q61069 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Usf1Q61069 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC18.92■□□□□ 0.62
Usf1Q61069 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC18.92■□□□□ 0.62
Usf1Q61069 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Usf1Q61069 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Usf1Q61069 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Usf1Q61069 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usf1Q61069 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usf1Q61069 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usf1Q61069 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usf1Q61069 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usf1Q61069 AC099934.2-201ENSMUST00000196389 70 ntBASIC18.91■□□□□ 0.62
Usf1Q61069 AC156953.1-201ENSMUST00000196953 70 ntBASIC18.91■□□□□ 0.62
Usf1Q61069 AC157822.2-201ENSMUST00000200291 70 ntBASIC18.91■□□□□ 0.62
Usf1Q61069 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usf1Q61069 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Usf1Q61069 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usf1Q61069 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Usf1Q61069 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usf1Q61069 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usf1Q61069 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usf1Q61069 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC18.9■□□□□ 0.62
Usf1Q61069 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usf1Q61069 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Usf1Q61069 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usf1Q61069 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC18.9■□□□□ 0.62
Usf1Q61069 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usf1Q61069 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC18.9■□□□□ 0.62
Usf1Q61069 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Usf1Q61069 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usf1Q61069 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usf1Q61069 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
Usf1Q61069 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usf1Q61069 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Usf1Q61069 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Usf1Q61069 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Usf1Q61069 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Usf1Q61069 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
Usf1Q61069 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Usf1Q61069 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC18.89■□□□□ 0.61
Usf1Q61069 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC18.89■□□□□ 0.61
Usf1Q61069 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Usf1Q61069 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usf1Q61069 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usf1Q61069 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Usf1Q61069 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Usf1Q61069 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Usf1Q61069 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Usf1Q61069 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Usf1Q61069 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Usf1Q61069 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC18.88■□□□□ 0.61
Usf1Q61069 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
Usf1Q61069 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC18.88■□□□□ 0.61
Usf1Q61069 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC18.88■□□□□ 0.61
Usf1Q61069 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Usf1Q61069 AC166356.1-201ENSMUST00000228236 1426 ntBASIC18.88■□□□□ 0.61
Usf1Q61069 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC18.88■□□□□ 0.61
Usf1Q61069 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
Usf1Q61069 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usf1Q61069 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usf1Q61069 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Usf1Q61069 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Usf1Q61069 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 51.9 ms