Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col9a1Q05722 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC20.68■□□□□ 0.9
Col9a1Q05722 Gm3807-201ENSMUST00000193520 1168 ntBASIC20.68■□□□□ 0.9
Col9a1Q05722 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC20.68■□□□□ 0.9
Col9a1Q05722 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col9a1Q05722 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col9a1Q05722 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Col9a1Q05722 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Col9a1Q05722 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Col9a1Q05722 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col9a1Q05722 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Col9a1Q05722 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Col9a1Q05722 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col9a1Q05722 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC20.66■□□□□ 0.9
Col9a1Q05722 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Col9a1Q05722 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC20.66■□□□□ 0.9
Col9a1Q05722 Gm43759-201ENSMUST00000196925 1261 ntBASIC20.66■□□□□ 0.9
Col9a1Q05722 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC20.66■□□□□ 0.9
Col9a1Q05722 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC20.66■□□□□ 0.9
Col9a1Q05722 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Col9a1Q05722 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Col9a1Q05722 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col9a1Q05722 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Col9a1Q05722 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col9a1Q05722 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Col9a1Q05722 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC20.65■□□□□ 0.9
Col9a1Q05722 Nsd1-206ENSMUST00000224918 1001 ntBASIC20.65■□□□□ 0.9
Col9a1Q05722 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Col9a1Q05722 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Col9a1Q05722 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Col9a1Q05722 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Col9a1Q05722 Mir5133-201ENSMUST00000174955 77 ntBASIC20.64■□□□□ 0.89
Col9a1Q05722 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Col9a1Q05722 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Col9a1Q05722 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col9a1Q05722 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col9a1Q05722 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC20.63■□□□□ 0.89
Col9a1Q05722 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col9a1Q05722 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col9a1Q05722 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col9a1Q05722 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col9a1Q05722 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC20.62■□□□□ 0.89
Col9a1Q05722 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col9a1Q05722 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Col9a1Q05722 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Col9a1Q05722 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Col9a1Q05722 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Col9a1Q05722 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Col9a1Q05722 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col9a1Q05722 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC20.61■□□□□ 0.89
Col9a1Q05722 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Col9a1Q05722 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col9a1Q05722 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Col9a1Q05722 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col9a1Q05722 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Col9a1Q05722 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Col9a1Q05722 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC20.6■□□□□ 0.89
Col9a1Q05722 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC20.59■□□□□ 0.89
Col9a1Q05722 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col9a1Q05722 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC20.59■□□□□ 0.89
Col9a1Q05722 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col9a1Q05722 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Col9a1Q05722 Krtap5-1-202ENSMUST00000188274 742 ntBASIC20.58■□□□□ 0.89
Col9a1Q05722 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
Col9a1Q05722 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
Col9a1Q05722 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col9a1Q05722 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col9a1Q05722 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col9a1Q05722 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
Col9a1Q05722 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col9a1Q05722 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col9a1Q05722 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col9a1Q05722 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col9a1Q05722 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC20.56■□□□□ 0.88
Col9a1Q05722 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC20.56■□□□□ 0.88
Col9a1Q05722 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col9a1Q05722 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col9a1Q05722 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Col9a1Q05722 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col9a1Q05722 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col9a1Q05722 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col9a1Q05722 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col9a1Q05722 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col9a1Q05722 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col9a1Q05722 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col9a1Q05722 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Col9a1Q05722 AC135637.1-201ENSMUST00000227750 365 ntBASIC20.54■□□□□ 0.88
Col9a1Q05722 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col9a1Q05722 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col9a1Q05722 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Col9a1Q05722 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col9a1Q05722 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
Col9a1Q05722 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col9a1Q05722 Gm10819-201ENSMUST00000099988 561 ntBASIC20.53■□□□□ 0.88
Col9a1Q05722 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col9a1Q05722 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col9a1Q05722 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col9a1Q05722 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
Col9a1Q05722 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col9a1Q05722 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC20.52■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 13.8 ms