Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Sox3P53784 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Sox3P53784 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Sox3P53784 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Sox3P53784 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Sox3P53784 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Sox3P53784 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Sox3P53784 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
Sox3P53784 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Sox3P53784 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC19.65■□□□□ 0.74
Sox3P53784 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC19.65■□□□□ 0.74
Sox3P53784 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Sox3P53784 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Sox3P53784 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Sox3P53784 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC19.65■□□□□ 0.74
Sox3P53784 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Sox3P53784 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Sox3P53784 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Sox3P53784 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Sox3P53784 Gm12504-201ENSMUST00000120860 2231 ntBASIC19.64■□□□□ 0.74
Sox3P53784 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Sox3P53784 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Sox3P53784 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Sox3P53784 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Sox3P53784 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Sox3P53784 AC164433.2-201ENSMUST00000226346 1701 ntBASIC19.64■□□□□ 0.73
Sox3P53784 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Sox3P53784 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Sox3P53784 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Sox3P53784 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Sox3P53784 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Sox3P53784 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Sox3P53784 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Sox3P53784 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
Sox3P53784 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Sox3P53784 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Sox3P53784 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC19.63■□□□□ 0.73
Sox3P53784 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC19.63■□□□□ 0.73
Sox3P53784 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Sox3P53784 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Sox3P53784 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Sox3P53784 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Sox3P53784 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC19.62■□□□□ 0.73
Sox3P53784 AC115037.1-201ENSMUST00000223391 2173 ntBASIC19.62■□□□□ 0.73
Sox3P53784 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Sox3P53784 AC116713.1-201ENSMUST00000215074 430 ntBASIC19.62■□□□□ 0.73
Sox3P53784 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Sox3P53784 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Sox3P53784 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC19.62■□□□□ 0.73
Sox3P53784 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Sox3P53784 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC19.61■□□□□ 0.73
Sox3P53784 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Sox3P53784 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Sox3P53784 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Sox3P53784 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Sox3P53784 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Sox3P53784 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Sox3P53784 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Sox3P53784 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Sox3P53784 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC19.6■□□□□ 0.73
Sox3P53784 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Sox3P53784 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Sox3P53784 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
Sox3P53784 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Sox3P53784 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Sox3P53784 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Sox3P53784 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Sox3P53784 AC153524.1-201ENSMUST00000220436 1935 ntBASIC19.59■□□□□ 0.73
Sox3P53784 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Sox3P53784 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Sox3P53784 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Sox3P53784 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
Sox3P53784 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Sox3P53784 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
Sox3P53784 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Sox3P53784 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Sox3P53784 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
Sox3P53784 Notumos-201ENSMUST00000151998 2659 ntBASIC19.58■□□□□ 0.73
Sox3P53784 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Sox3P53784 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
Sox3P53784 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Sox3P53784 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Sox3P53784 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
Sox3P53784 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Sox3P53784 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Sox3P53784 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Sox3P53784 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC19.57■□□□□ 0.72
Sox3P53784 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Sox3P53784 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC19.57■□□□□ 0.72
Sox3P53784 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC19.57■□□□□ 0.72
Sox3P53784 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Sox3P53784 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Sox3P53784 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Sox3P53784 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
Sox3P53784 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Sox3P53784 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Sox3P53784 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Sox3P53784 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Sox3P53784 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Sox3P53784 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 16.4 ms