Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC18.59■□□□□ 0.57
Rfx3P48381 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC18.59■□□□□ 0.57
Rfx3P48381 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rfx3P48381 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rfx3P48381 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rfx3P48381 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rfx3P48381 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rfx3P48381 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Rfx3P48381 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Rfx3P48381 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Rfx3P48381 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Rfx3P48381 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Rfx3P48381 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
Rfx3P48381 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Rfx3P48381 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rfx3P48381 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rfx3P48381 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC18.57■□□□□ 0.56
Rfx3P48381 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rfx3P48381 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rfx3P48381 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rfx3P48381 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rfx3P48381 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Rfx3P48381 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Rfx3P48381 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
Rfx3P48381 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Rfx3P48381 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Rfx3P48381 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Rfx3P48381 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Rfx3P48381 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Rfx3P48381 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Rfx3P48381 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Rfx3P48381 Gm34220-201ENSMUST00000223001 2709 ntBASIC18.55■□□□□ 0.56
Rfx3P48381 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Rfx3P48381 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Rfx3P48381 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Rfx3P48381 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC18.55■□□□□ 0.56
Rfx3P48381 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC18.55■□□□□ 0.56
Rfx3P48381 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC18.55■□□□□ 0.56
Rfx3P48381 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC18.55■□□□□ 0.56
Rfx3P48381 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Rfx3P48381 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
Rfx3P48381 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Rfx3P48381 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Rfx3P48381 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Rfx3P48381 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
Rfx3P48381 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Rfx3P48381 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Rfx3P48381 Kdm3b-204ENSMUST00000224715 2032 ntBASIC18.54■□□□□ 0.56
Rfx3P48381 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Rfx3P48381 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Rfx3P48381 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Rfx3P48381 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Rfx3P48381 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Rfx3P48381 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rfx3P48381 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Rfx3P48381 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC18.53■□□□□ 0.56
Rfx3P48381 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC18.53■□□□□ 0.56
Rfx3P48381 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Rfx3P48381 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rfx3P48381 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rfx3P48381 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rfx3P48381 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rfx3P48381 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rfx3P48381 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Rfx3P48381 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Rfx3P48381 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC18.53■□□□□ 0.56
Rfx3P48381 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Rfx3P48381 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Rfx3P48381 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
Rfx3P48381 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Rfx3P48381 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Rfx3P48381 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Rfx3P48381 Gm28536-201ENSMUST00000190971 1317 ntBASIC18.51■□□□□ 0.55
Rfx3P48381 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Rfx3P48381 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Rfx3P48381 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Rfx3P48381 Nsd1-203ENSMUST00000224156 1149 ntBASIC18.51■□□□□ 0.55
Rfx3P48381 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Rfx3P48381 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Rfx3P48381 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Rfx3P48381 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Rfx3P48381 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Rfx3P48381 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Rfx3P48381 Gm11847-201ENSMUST00000125165 1119 ntBASIC18.5■□□□□ 0.55
Rfx3P48381 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
Rfx3P48381 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Rfx3P48381 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Rfx3P48381 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Rfx3P48381 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Rfx3P48381 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Rfx3P48381 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC18.5■□□□□ 0.55
Rfx3P48381 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Rfx3P48381 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Rfx3P48381 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Rfx3P48381 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Rfx3P48381 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Rfx3P48381 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Rfx3P48381 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Rfx3P48381 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Rfx3P48381 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms