Protein–RNA interactions for Protein: P47741

Tnfrsf4, Tumor necrosis factor receptor superfamily member 4, mousemouse

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfrsf4P47741 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
Tnfrsf4P47741 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Tnfrsf4P47741 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Tnfrsf4P47741 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC21■□□□□ 0.95
Tnfrsf4P47741 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Tnfrsf4P47741 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
Tnfrsf4P47741 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC21■□□□□ 0.95
Tnfrsf4P47741 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Tnfrsf4P47741 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
Tnfrsf4P47741 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC20.99■□□□□ 0.95
Tnfrsf4P47741 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC20.99■□□□□ 0.95
Tnfrsf4P47741 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Tnfrsf4P47741 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Tnfrsf4P47741 Gm43060-201ENSMUST00000200621 289 ntBASIC20.98■□□□□ 0.95
Tnfrsf4P47741 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC20.98■□□□□ 0.95
Tnfrsf4P47741 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Tnfrsf4P47741 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Tnfrsf4P47741 AC115037.1-201ENSMUST00000223391 2173 ntBASIC20.97■□□□□ 0.95
Tnfrsf4P47741 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Tnfrsf4P47741 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
Tnfrsf4P47741 Gm10493-201ENSMUST00000097270 612 ntBASIC20.97■□□□□ 0.95
Tnfrsf4P47741 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
Tnfrsf4P47741 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Tnfrsf4P47741 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Tnfrsf4P47741 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Tnfrsf4P47741 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC20.96■□□□□ 0.95
Tnfrsf4P47741 Gm29257-201ENSMUST00000186115 639 ntBASIC20.96■□□□□ 0.95
Tnfrsf4P47741 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Tnfrsf4P47741 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
Tnfrsf4P47741 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Tnfrsf4P47741 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Tnfrsf4P47741 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Tnfrsf4P47741 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Tnfrsf4P47741 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
Tnfrsf4P47741 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Tnfrsf4P47741 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Tnfrsf4P47741 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Tnfrsf4P47741 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Tnfrsf4P47741 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Tnfrsf4P47741 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Tnfrsf4P47741 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
Tnfrsf4P47741 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Tnfrsf4P47741 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Tnfrsf4P47741 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Tnfrsf4P47741 Gm7291-201ENSMUST00000199147 382 ntBASIC20.94■□□□□ 0.94
Tnfrsf4P47741 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Tnfrsf4P47741 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Tnfrsf4P47741 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Tnfrsf4P47741 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Tnfrsf4P47741 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Tnfrsf4P47741 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC20.94■□□□□ 0.94
Tnfrsf4P47741 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Tnfrsf4P47741 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Tnfrsf4P47741 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Tnfrsf4P47741 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Tnfrsf4P47741 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC20.93■□□□□ 0.94
Tnfrsf4P47741 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Tnfrsf4P47741 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC20.93■□□□□ 0.94
Tnfrsf4P47741 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Tnfrsf4P47741 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Tnfrsf4P47741 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Tnfrsf4P47741 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Tnfrsf4P47741 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Tnfrsf4P47741 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Tnfrsf4P47741 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Tnfrsf4P47741 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Tnfrsf4P47741 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
Tnfrsf4P47741 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Tnfrsf4P47741 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Tnfrsf4P47741 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Tnfrsf4P47741 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Tnfrsf4P47741 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC20.91■□□□□ 0.94
Tnfrsf4P47741 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC20.91■□□□□ 0.94
Tnfrsf4P47741 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Tnfrsf4P47741 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Tnfrsf4P47741 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Tnfrsf4P47741 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Tnfrsf4P47741 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
Tnfrsf4P47741 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Tnfrsf4P47741 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Tnfrsf4P47741 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Tnfrsf4P47741 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Tnfrsf4P47741 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC20.9■□□□□ 0.94
Tnfrsf4P47741 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC20.9■□□□□ 0.94
Tnfrsf4P47741 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Tnfrsf4P47741 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Tnfrsf4P47741 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Tnfrsf4P47741 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC20.89■□□□□ 0.93
Tnfrsf4P47741 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Tnfrsf4P47741 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC20.89■□□□□ 0.93
Tnfrsf4P47741 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Tnfrsf4P47741 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC20.89■□□□□ 0.93
Tnfrsf4P47741 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Tnfrsf4P47741 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Tnfrsf4P47741 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC20.88■□□□□ 0.93
Tnfrsf4P47741 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Tnfrsf4P47741 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Tnfrsf4P47741 Spcs1-207ENSMUST00000228767 1008 ntBASIC20.88■□□□□ 0.93
Tnfrsf4P47741 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Tnfrsf4P47741 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms