Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
Chmp6P0C0A3 Gm10399-202ENSMUST00000202768 748 ntBASIC22.41■■□□□ 1.18
Chmp6P0C0A3 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
Chmp6P0C0A3 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Chmp6P0C0A3 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Chmp6P0C0A3 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Chmp6P0C0A3 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
Chmp6P0C0A3 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Chmp6P0C0A3 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Chmp6P0C0A3 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Chmp6P0C0A3 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC22.4■■□□□ 1.18
Chmp6P0C0A3 Gm5131-201ENSMUST00000212776 1238 ntBASIC22.4■■□□□ 1.18
Chmp6P0C0A3 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
Chmp6P0C0A3 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC22.4■■□□□ 1.18
Chmp6P0C0A3 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Chmp6P0C0A3 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Chmp6P0C0A3 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Chmp6P0C0A3 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.17
Chmp6P0C0A3 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Chmp6P0C0A3 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Chmp6P0C0A3 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.17
Chmp6P0C0A3 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Chmp6P0C0A3 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Chmp6P0C0A3 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC22.38■■□□□ 1.17
Chmp6P0C0A3 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC22.38■■□□□ 1.17
Chmp6P0C0A3 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Chmp6P0C0A3 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Chmp6P0C0A3 Gm10620-201ENSMUST00000098379 1332 ntBASIC22.37■■□□□ 1.17
Chmp6P0C0A3 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Chmp6P0C0A3 Gm43006-201ENSMUST00000197702 1602 ntBASIC22.37■■□□□ 1.17
Chmp6P0C0A3 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Chmp6P0C0A3 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Chmp6P0C0A3 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
Chmp6P0C0A3 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC22.36■■□□□ 1.17
Chmp6P0C0A3 Gm45102-201ENSMUST00000207427 857 ntBASIC22.36■■□□□ 1.17
Chmp6P0C0A3 Gm40881-201ENSMUST00000223397 166 ntBASIC22.36■■□□□ 1.17
Chmp6P0C0A3 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Chmp6P0C0A3 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC22.36■■□□□ 1.17
Chmp6P0C0A3 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Chmp6P0C0A3 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Chmp6P0C0A3 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Chmp6P0C0A3 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
Chmp6P0C0A3 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC22.35■■□□□ 1.17
Chmp6P0C0A3 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
Chmp6P0C0A3 Gm7417-201ENSMUST00000192950 473 ntBASIC22.35■■□□□ 1.17
Chmp6P0C0A3 AC116713.1-201ENSMUST00000215074 430 ntBASIC22.35■■□□□ 1.17
Chmp6P0C0A3 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Chmp6P0C0A3 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC22.35■■□□□ 1.17
Chmp6P0C0A3 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Chmp6P0C0A3 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC22.34■■□□□ 1.17
Chmp6P0C0A3 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
Chmp6P0C0A3 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Chmp6P0C0A3 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Chmp6P0C0A3 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC22.34■■□□□ 1.17
Chmp6P0C0A3 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
Chmp6P0C0A3 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC22.33■■□□□ 1.17
Chmp6P0C0A3 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC22.33■■□□□ 1.17
Chmp6P0C0A3 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Chmp6P0C0A3 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC22.33■■□□□ 1.17
Chmp6P0C0A3 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
Chmp6P0C0A3 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Chmp6P0C0A3 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Chmp6P0C0A3 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC22.32■■□□□ 1.16
Chmp6P0C0A3 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Chmp6P0C0A3 Gm42418-201ENSMUST00000182010 1831 ntBASIC22.32■■□□□ 1.16
Chmp6P0C0A3 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
Chmp6P0C0A3 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Chmp6P0C0A3 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC22.32■■□□□ 1.16
Chmp6P0C0A3 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Chmp6P0C0A3 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Chmp6P0C0A3 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
Chmp6P0C0A3 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC22.31■■□□□ 1.16
Chmp6P0C0A3 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC22.31■■□□□ 1.16
Chmp6P0C0A3 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC22.31■■□□□ 1.16
Chmp6P0C0A3 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
Chmp6P0C0A3 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Chmp6P0C0A3 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Chmp6P0C0A3 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
Chmp6P0C0A3 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Chmp6P0C0A3 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Chmp6P0C0A3 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Chmp6P0C0A3 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Chmp6P0C0A3 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Chmp6P0C0A3 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Chmp6P0C0A3 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC22.29■■□□□ 1.16
Chmp6P0C0A3 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC22.29■■□□□ 1.16
Chmp6P0C0A3 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
Chmp6P0C0A3 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC22.29■■□□□ 1.16
Chmp6P0C0A3 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Chmp6P0C0A3 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Chmp6P0C0A3 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Chmp6P0C0A3 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Chmp6P0C0A3 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Chmp6P0C0A3 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC22.27■■□□□ 1.16
Chmp6P0C0A3 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC22.27■■□□□ 1.16
Chmp6P0C0A3 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Chmp6P0C0A3 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Chmp6P0C0A3 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Chmp6P0C0A3 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Chmp6P0C0A3 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Retrieved 100 of 76,532 protein–RNA pairs in 14.2 ms