Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Pcdha4O88689 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Pcdha4O88689 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Pcdha4O88689 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Pcdha4O88689 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Pcdha4O88689 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
Pcdha4O88689 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Pcdha4O88689 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC23.18■■□□□ 1.3
Pcdha4O88689 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC23.18■■□□□ 1.3
Pcdha4O88689 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Pcdha4O88689 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Pcdha4O88689 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Pcdha4O88689 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Pcdha4O88689 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
Pcdha4O88689 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Pcdha4O88689 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Pcdha4O88689 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC23.17■■□□□ 1.3
Pcdha4O88689 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC23.17■■□□□ 1.3
Pcdha4O88689 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Pcdha4O88689 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC23.17■■□□□ 1.3
Pcdha4O88689 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
Pcdha4O88689 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Pcdha4O88689 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
Pcdha4O88689 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Pcdha4O88689 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Pcdha4O88689 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Pcdha4O88689 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
Pcdha4O88689 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Pcdha4O88689 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
Pcdha4O88689 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Pcdha4O88689 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC23.15■■□□□ 1.3
Pcdha4O88689 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC23.15■■□□□ 1.3
Pcdha4O88689 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC23.15■■□□□ 1.3
Pcdha4O88689 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Pcdha4O88689 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Pcdha4O88689 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Pcdha4O88689 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
Pcdha4O88689 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
Pcdha4O88689 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC23.14■■□□□ 1.29
Pcdha4O88689 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Pcdha4O88689 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
Pcdha4O88689 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Pcdha4O88689 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Pcdha4O88689 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC23.14■■□□□ 1.29
Pcdha4O88689 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Pcdha4O88689 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC23.13■■□□□ 1.29
Pcdha4O88689 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Pcdha4O88689 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Pcdha4O88689 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Pcdha4O88689 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
Pcdha4O88689 Gm7143-201ENSMUST00000222811 859 ntBASIC23.13■■□□□ 1.29
Pcdha4O88689 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
Pcdha4O88689 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
Pcdha4O88689 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Pcdha4O88689 Gm13042-201ENSMUST00000119244 1955 ntBASIC23.12■■□□□ 1.29
Pcdha4O88689 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Pcdha4O88689 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
Pcdha4O88689 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Pcdha4O88689 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Pcdha4O88689 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC23.12■■□□□ 1.29
Pcdha4O88689 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Pcdha4O88689 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Pcdha4O88689 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Pcdha4O88689 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Pcdha4O88689 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Pcdha4O88689 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
Pcdha4O88689 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
Pcdha4O88689 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC23.11■■□□□ 1.29
Pcdha4O88689 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC23.11■■□□□ 1.29
Pcdha4O88689 Gm9870-201ENSMUST00000063874 645 ntBASIC23.11■■□□□ 1.29
Pcdha4O88689 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Pcdha4O88689 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Pcdha4O88689 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Pcdha4O88689 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Pcdha4O88689 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Pcdha4O88689 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Pcdha4O88689 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Pcdha4O88689 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC23.1■■□□□ 1.29
Pcdha4O88689 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
Pcdha4O88689 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Pcdha4O88689 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
Pcdha4O88689 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Pcdha4O88689 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC23.09■■□□□ 1.29
Pcdha4O88689 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
Pcdha4O88689 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
Pcdha4O88689 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC23.09■■□□□ 1.29
Pcdha4O88689 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Pcdha4O88689 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC23.08■■□□□ 1.29
Pcdha4O88689 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Pcdha4O88689 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
Pcdha4O88689 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Pcdha4O88689 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC23.08■■□□□ 1.29
Pcdha4O88689 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.28
Pcdha4O88689 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
Pcdha4O88689 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Pcdha4O88689 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
Pcdha4O88689 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC23.07■■□□□ 1.28
Pcdha4O88689 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Pcdha4O88689 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC23.07■■□□□ 1.28
Pcdha4O88689 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms