Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Lmx1bO88609 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lmx1bO88609 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lmx1bO88609 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lmx1bO88609 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lmx1bO88609 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC18.68■□□□□ 0.58
Lmx1bO88609 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lmx1bO88609 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
Lmx1bO88609 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC18.68■□□□□ 0.58
Lmx1bO88609 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC18.68■□□□□ 0.58
Lmx1bO88609 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lmx1bO88609 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lmx1bO88609 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lmx1bO88609 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lmx1bO88609 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Lmx1bO88609 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lmx1bO88609 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lmx1bO88609 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Lmx1bO88609 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Lmx1bO88609 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC18.67■□□□□ 0.58
Lmx1bO88609 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC18.67■□□□□ 0.58
Lmx1bO88609 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Lmx1bO88609 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lmx1bO88609 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lmx1bO88609 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Lmx1bO88609 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Lmx1bO88609 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lmx1bO88609 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Lmx1bO88609 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Lmx1bO88609 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Lmx1bO88609 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lmx1bO88609 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lmx1bO88609 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lmx1bO88609 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lmx1bO88609 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lmx1bO88609 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lmx1bO88609 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Lmx1bO88609 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Lmx1bO88609 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC18.65■□□□□ 0.58
Lmx1bO88609 AC116713.1-201ENSMUST00000215074 430 ntBASIC18.65■□□□□ 0.58
Lmx1bO88609 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lmx1bO88609 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lmx1bO88609 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Lmx1bO88609 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lmx1bO88609 Gm37415-201ENSMUST00000192265 2054 ntBASIC18.64■□□□□ 0.57
Lmx1bO88609 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC18.64■□□□□ 0.57
Lmx1bO88609 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC18.64■□□□□ 0.57
Lmx1bO88609 Golgb1-201ENSMUST00000023534 498 ntBASIC18.64■□□□□ 0.57
Lmx1bO88609 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Lmx1bO88609 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lmx1bO88609 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC18.64■□□□□ 0.57
Lmx1bO88609 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lmx1bO88609 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Lmx1bO88609 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lmx1bO88609 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
Lmx1bO88609 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lmx1bO88609 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Lmx1bO88609 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Lmx1bO88609 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Lmx1bO88609 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC18.63■□□□□ 0.57
Lmx1bO88609 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Lmx1bO88609 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
Lmx1bO88609 Gm12504-201ENSMUST00000120860 2231 ntBASIC18.62■□□□□ 0.57
Lmx1bO88609 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Lmx1bO88609 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lmx1bO88609 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lmx1bO88609 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lmx1bO88609 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Lmx1bO88609 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lmx1bO88609 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lmx1bO88609 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Lmx1bO88609 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lmx1bO88609 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lmx1bO88609 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Lmx1bO88609 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lmx1bO88609 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lmx1bO88609 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lmx1bO88609 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lmx1bO88609 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC18.61■□□□□ 0.57
Lmx1bO88609 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Lmx1bO88609 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Lmx1bO88609 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lmx1bO88609 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC18.6■□□□□ 0.57
Lmx1bO88609 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
Lmx1bO88609 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Lmx1bO88609 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC18.6■□□□□ 0.57
Lmx1bO88609 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC18.6■□□□□ 0.57
Lmx1bO88609 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC18.6■□□□□ 0.57
Lmx1bO88609 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lmx1bO88609 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Lmx1bO88609 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lmx1bO88609 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lmx1bO88609 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lmx1bO88609 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC18.59■□□□□ 0.57
Lmx1bO88609 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Lmx1bO88609 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lmx1bO88609 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
Lmx1bO88609 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
Lmx1bO88609 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Lmx1bO88609 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms