Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Col6a3E9PWQ3 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Col6a3E9PWQ3 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Col6a3E9PWQ3 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Col6a3E9PWQ3 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Col6a3E9PWQ3 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
Col6a3E9PWQ3 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col6a3E9PWQ3 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col6a3E9PWQ3 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col6a3E9PWQ3 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC21.34■■□□□ 1.01
Col6a3E9PWQ3 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Col6a3E9PWQ3 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
Col6a3E9PWQ3 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Col6a3E9PWQ3 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC21.33■■□□□ 1.01
Col6a3E9PWQ3 AC165080.2-201ENSMUST00000217491 1530 ntBASIC21.33■■□□□ 1.01
Col6a3E9PWQ3 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC21.33■■□□□ 1
Col6a3E9PWQ3 Gm43859-201ENSMUST00000200075 1412 ntBASIC21.32■■□□□ 1
Col6a3E9PWQ3 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC21.32■■□□□ 1
Col6a3E9PWQ3 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Col6a3E9PWQ3 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Col6a3E9PWQ3 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col6a3E9PWQ3 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col6a3E9PWQ3 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
Col6a3E9PWQ3 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col6a3E9PWQ3 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC21.31■■□□□ 1
Col6a3E9PWQ3 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col6a3E9PWQ3 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC21.31■■□□□ 1
Col6a3E9PWQ3 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC21.31■■□□□ 1
Col6a3E9PWQ3 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC21.31■■□□□ 1
Col6a3E9PWQ3 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Col6a3E9PWQ3 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Col6a3E9PWQ3 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC21.3■■□□□ 1
Col6a3E9PWQ3 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC21.3■■□□□ 1
Col6a3E9PWQ3 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col6a3E9PWQ3 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col6a3E9PWQ3 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC21.3■■□□□ 1
Col6a3E9PWQ3 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col6a3E9PWQ3 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Col6a3E9PWQ3 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC21.29■■□□□ 1
Col6a3E9PWQ3 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC21.29■■□□□ 1
Col6a3E9PWQ3 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC21.29■■□□□ 1
Col6a3E9PWQ3 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC21.29■■□□□ 1
Col6a3E9PWQ3 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col6a3E9PWQ3 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC21.29■■□□□ 1
Col6a3E9PWQ3 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC21.29■■□□□ 1
Col6a3E9PWQ3 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
Col6a3E9PWQ3 Gm43759-201ENSMUST00000196925 1261 ntBASIC21.29■■□□□ 1
Col6a3E9PWQ3 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC21.28■■□□□ 1
Col6a3E9PWQ3 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC21.28■■□□□ 1
Col6a3E9PWQ3 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col6a3E9PWQ3 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Col6a3E9PWQ3 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC21.28■■□□□ 1
Col6a3E9PWQ3 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col6a3E9PWQ3 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col6a3E9PWQ3 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col6a3E9PWQ3 Gm13148-201ENSMUST00000118892 745 ntBASIC21.27■■□□□ 1
Col6a3E9PWQ3 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC21.27■■□□□ 1
Col6a3E9PWQ3 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Col6a3E9PWQ3 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC21.27■■□□□ 1
Col6a3E9PWQ3 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC21.27■■□□□ 1
Col6a3E9PWQ3 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC21.27■■□□□ 1
Col6a3E9PWQ3 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC21.27■■□□□ 1
Col6a3E9PWQ3 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC21.27■□□□□ 0.99
Col6a3E9PWQ3 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Col6a3E9PWQ3 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Col6a3E9PWQ3 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Col6a3E9PWQ3 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Col6a3E9PWQ3 Mir5133-201ENSMUST00000174955 77 ntBASIC21.25■□□□□ 0.99
Col6a3E9PWQ3 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col6a3E9PWQ3 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC21.25■□□□□ 0.99
Col6a3E9PWQ3 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col6a3E9PWQ3 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col6a3E9PWQ3 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Col6a3E9PWQ3 Gm10819-201ENSMUST00000099988 561 ntBASIC21.25■□□□□ 0.99
Col6a3E9PWQ3 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col6a3E9PWQ3 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col6a3E9PWQ3 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Col6a3E9PWQ3 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col6a3E9PWQ3 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col6a3E9PWQ3 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col6a3E9PWQ3 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Col6a3E9PWQ3 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col6a3E9PWQ3 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col6a3E9PWQ3 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col6a3E9PWQ3 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Col6a3E9PWQ3 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Col6a3E9PWQ3 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col6a3E9PWQ3 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Col6a3E9PWQ3 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC21.24■□□□□ 0.99
Col6a3E9PWQ3 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC21.23■□□□□ 0.99
Col6a3E9PWQ3 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Col6a3E9PWQ3 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC21.23■□□□□ 0.99
Col6a3E9PWQ3 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Col6a3E9PWQ3 AC158990.1-201ENSMUST00000221450 2016 ntBASIC21.23■□□□□ 0.99
Col6a3E9PWQ3 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col6a3E9PWQ3 AC135637.1-201ENSMUST00000227750 365 ntBASIC21.23■□□□□ 0.99
Col6a3E9PWQ3 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col6a3E9PWQ3 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Col6a3E9PWQ3 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC21.22■□□□□ 0.99
Col6a3E9PWQ3 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms