Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Chd3B1AR17 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Chd3B1AR17 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Chd3B1AR17 AC164883.3-201ENSMUST00000227396 1774 ntBASIC20.4■□□□□ 0.86
Chd3B1AR17 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
Chd3B1AR17 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Chd3B1AR17 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC20.4■□□□□ 0.86
Chd3B1AR17 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
Chd3B1AR17 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC20.39■□□□□ 0.86
Chd3B1AR17 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Chd3B1AR17 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Chd3B1AR17 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC20.39■□□□□ 0.85
Chd3B1AR17 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Chd3B1AR17 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Chd3B1AR17 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Chd3B1AR17 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Chd3B1AR17 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Chd3B1AR17 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC20.38■□□□□ 0.85
Chd3B1AR17 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Chd3B1AR17 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Chd3B1AR17 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Chd3B1AR17 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC20.37■□□□□ 0.85
Chd3B1AR17 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Chd3B1AR17 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Chd3B1AR17 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Chd3B1AR17 Krt8-ps-201ENSMUST00000208495 945 ntBASIC20.37■□□□□ 0.85
Chd3B1AR17 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Chd3B1AR17 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Chd3B1AR17 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Chd3B1AR17 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Chd3B1AR17 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Chd3B1AR17 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Chd3B1AR17 Gm7143-201ENSMUST00000222811 859 ntBASIC20.36■□□□□ 0.85
Chd3B1AR17 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Chd3B1AR17 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Chd3B1AR17 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Chd3B1AR17 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC20.35■□□□□ 0.85
Chd3B1AR17 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC20.35■□□□□ 0.85
Chd3B1AR17 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Chd3B1AR17 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC20.35■□□□□ 0.85
Chd3B1AR17 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Chd3B1AR17 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Chd3B1AR17 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Chd3B1AR17 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Chd3B1AR17 Gm12821-201ENSMUST00000120022 600 ntBASIC20.34■□□□□ 0.85
Chd3B1AR17 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Chd3B1AR17 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Chd3B1AR17 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Chd3B1AR17 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Chd3B1AR17 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
Chd3B1AR17 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Chd3B1AR17 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Chd3B1AR17 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Chd3B1AR17 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Chd3B1AR17 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Chd3B1AR17 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC20.33■□□□□ 0.85
Chd3B1AR17 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
Chd3B1AR17 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC20.33■□□□□ 0.85
Chd3B1AR17 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC20.33■□□□□ 0.84
Chd3B1AR17 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Chd3B1AR17 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Chd3B1AR17 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC20.33■□□□□ 0.84
Chd3B1AR17 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Chd3B1AR17 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Chd3B1AR17 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Chd3B1AR17 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Chd3B1AR17 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Chd3B1AR17 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Chd3B1AR17 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Chd3B1AR17 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Chd3B1AR17 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Chd3B1AR17 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Chd3B1AR17 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Chd3B1AR17 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Chd3B1AR17 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Chd3B1AR17 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Chd3B1AR17 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
Chd3B1AR17 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Chd3B1AR17 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Chd3B1AR17 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC20.3■□□□□ 0.84
Chd3B1AR17 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Chd3B1AR17 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Chd3B1AR17 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Chd3B1AR17 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC20.3■□□□□ 0.84
Chd3B1AR17 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Chd3B1AR17 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Chd3B1AR17 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Chd3B1AR17 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC20.29■□□□□ 0.84
Chd3B1AR17 Gm43137-201ENSMUST00000198052 594 ntBASIC20.29■□□□□ 0.84
Chd3B1AR17 Gm9870-201ENSMUST00000063874 645 ntBASIC20.29■□□□□ 0.84
Chd3B1AR17 Gm43403-201ENSMUST00000198011 1786 ntBASIC20.29■□□□□ 0.84
Chd3B1AR17 Gm17641-201ENSMUST00000166328 2350 ntBASIC20.28■□□□□ 0.84
Chd3B1AR17 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Chd3B1AR17 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Chd3B1AR17 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC20.28■□□□□ 0.84
Chd3B1AR17 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC20.28■□□□□ 0.84
Chd3B1AR17 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Chd3B1AR17 Gm8770-201ENSMUST00000121113 1109 ntBASIC20.28■□□□□ 0.84
Chd3B1AR17 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
Chd3B1AR17 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC20.28■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms