Protein–RNA interactions for Protein: A2AN08

Ubr4, E3 ubiquitin-protein ligase UBR4, mousemouse

Predictions only

Length 5,180 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr4A2AN08 Gm42555-201ENSMUST00000199304 1039 ntBASIC11.27□□□□□ -0.6
Ubr4A2AN08 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
Ubr4A2AN08 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC11.27□□□□□ -0.6
Ubr4A2AN08 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Ubr4A2AN08 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Ubr4A2AN08 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Ubr4A2AN08 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Ubr4A2AN08 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Ubr4A2AN08 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC11.27□□□□□ -0.61
Ubr4A2AN08 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Ubr4A2AN08 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Ubr4A2AN08 Gm37856-201ENSMUST00000191634 999 ntBASIC11.26□□□□□ -0.61
Ubr4A2AN08 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Ubr4A2AN08 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Ubr4A2AN08 Gm11643-201ENSMUST00000119578 864 ntBASIC11.26□□□□□ -0.61
Ubr4A2AN08 Gm10812-201ENSMUST00000099864 546 ntBASIC11.26□□□□□ -0.61
Ubr4A2AN08 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Ubr4A2AN08 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Ubr4A2AN08 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Ubr4A2AN08 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC11.26□□□□□ -0.61
Ubr4A2AN08 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Ubr4A2AN08 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Ubr4A2AN08 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC11.26□□□□□ -0.61
Ubr4A2AN08 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Ubr4A2AN08 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Ubr4A2AN08 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ubr4A2AN08 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Ubr4A2AN08 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ubr4A2AN08 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Ubr4A2AN08 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Ubr4A2AN08 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Ubr4A2AN08 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC11.25□□□□□ -0.61
Ubr4A2AN08 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ubr4A2AN08 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
Ubr4A2AN08 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
Ubr4A2AN08 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Ubr4A2AN08 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC11.25□□□□□ -0.61
Ubr4A2AN08 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ubr4A2AN08 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
Ubr4A2AN08 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ubr4A2AN08 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Ubr4A2AN08 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC11.25□□□□□ -0.61
Ubr4A2AN08 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ubr4A2AN08 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ubr4A2AN08 Gm3807-201ENSMUST00000193520 1168 ntBASIC11.24□□□□□ -0.61
Ubr4A2AN08 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Ubr4A2AN08 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ubr4A2AN08 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ubr4A2AN08 AC135637.1-201ENSMUST00000227750 365 ntBASIC11.24□□□□□ -0.61
Ubr4A2AN08 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ubr4A2AN08 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ubr4A2AN08 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Ubr4A2AN08 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Ubr4A2AN08 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC11.24□□□□□ -0.61
Ubr4A2AN08 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Ubr4A2AN08 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC11.24□□□□□ -0.61
Ubr4A2AN08 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
Ubr4A2AN08 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ubr4A2AN08 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC11.24□□□□□ -0.61
Ubr4A2AN08 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Ubr4A2AN08 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Ubr4A2AN08 Gm44878-201ENSMUST00000205812 1295 ntBASIC11.23□□□□□ -0.61
Ubr4A2AN08 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Ubr4A2AN08 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC11.23□□□□□ -0.61
Ubr4A2AN08 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Ubr4A2AN08 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ubr4A2AN08 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC11.23□□□□□ -0.61
Ubr4A2AN08 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Ubr4A2AN08 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Ubr4A2AN08 Gm15565-201ENSMUST00000118890 427 ntBASIC11.23□□□□□ -0.61
Ubr4A2AN08 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC11.23□□□□□ -0.61
Ubr4A2AN08 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ubr4A2AN08 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC11.22□□□□□ -0.61
Ubr4A2AN08 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC11.22□□□□□ -0.61
Ubr4A2AN08 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
Ubr4A2AN08 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ubr4A2AN08 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ubr4A2AN08 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ubr4A2AN08 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ubr4A2AN08 Gm13148-201ENSMUST00000118892 745 ntBASIC11.22□□□□□ -0.61
Ubr4A2AN08 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ubr4A2AN08 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
Ubr4A2AN08 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ubr4A2AN08 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ubr4A2AN08 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ubr4A2AN08 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Ubr4A2AN08 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Ubr4A2AN08 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Ubr4A2AN08 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Ubr4A2AN08 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Ubr4A2AN08 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Ubr4A2AN08 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
Ubr4A2AN08 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ubr4A2AN08 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ubr4A2AN08 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC11.21□□□□□ -0.61
Ubr4A2AN08 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Ubr4A2AN08 AC165080.2-201ENSMUST00000217491 1530 ntBASIC11.21□□□□□ -0.62
Ubr4A2AN08 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC11.21□□□□□ -0.62
Ubr4A2AN08 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Ubr4A2AN08 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms