Protein–RNA interactions for Protein: A0A0B4J1K2

Trav9-4, T cell receptor alpha variable 9-4 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav9-4A0A0B4J1K2 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav9-4A0A0B4J1K2 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav9-4A0A0B4J1K2 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Trav9-4A0A0B4J1K2 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav9-4A0A0B4J1K2 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav9-4A0A0B4J1K2 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav9-4A0A0B4J1K2 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav9-4A0A0B4J1K2 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trav9-4A0A0B4J1K2 Gm12504-201ENSMUST00000120860 2231 ntBASIC15.5■□□□□ 0.07
Trav9-4A0A0B4J1K2 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav9-4A0A0B4J1K2 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Trav9-4A0A0B4J1K2 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Trav9-4A0A0B4J1K2 Etf1-202ENSMUST00000180351 108 ntBASIC15.5■□□□□ 0.07
Trav9-4A0A0B4J1K2 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav9-4A0A0B4J1K2 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav9-4A0A0B4J1K2 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav9-4A0A0B4J1K2 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC15.5■□□□□ 0.07
Trav9-4A0A0B4J1K2 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav9-4A0A0B4J1K2 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trav9-4A0A0B4J1K2 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC15.5■□□□□ 0.07
Trav9-4A0A0B4J1K2 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav9-4A0A0B4J1K2 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav9-4A0A0B4J1K2 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav9-4A0A0B4J1K2 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav9-4A0A0B4J1K2 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav9-4A0A0B4J1K2 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav9-4A0A0B4J1K2 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC15.49■□□□□ 0.07
Trav9-4A0A0B4J1K2 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav9-4A0A0B4J1K2 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav9-4A0A0B4J1K2 Gm9959-201ENSMUST00000068277 390 ntBASIC15.49■□□□□ 0.07
Trav9-4A0A0B4J1K2 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav9-4A0A0B4J1K2 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav9-4A0A0B4J1K2 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trav9-4A0A0B4J1K2 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav9-4A0A0B4J1K2 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav9-4A0A0B4J1K2 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trav9-4A0A0B4J1K2 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trav9-4A0A0B4J1K2 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Trav9-4A0A0B4J1K2 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trav9-4A0A0B4J1K2 Gm13042-201ENSMUST00000119244 1955 ntBASIC15.48■□□□□ 0.07
Trav9-4A0A0B4J1K2 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC15.48■□□□□ 0.07
Trav9-4A0A0B4J1K2 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC15.48■□□□□ 0.07
Trav9-4A0A0B4J1K2 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trav9-4A0A0B4J1K2 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Trav9-4A0A0B4J1K2 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav9-4A0A0B4J1K2 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav9-4A0A0B4J1K2 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC15.47■□□□□ 0.07
Trav9-4A0A0B4J1K2 Rps24-207ENSMUST00000224568 714 ntBASIC15.47■□□□□ 0.07
Trav9-4A0A0B4J1K2 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav9-4A0A0B4J1K2 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav9-4A0A0B4J1K2 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav9-4A0A0B4J1K2 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav9-4A0A0B4J1K2 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
Trav9-4A0A0B4J1K2 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav9-4A0A0B4J1K2 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav9-4A0A0B4J1K2 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav9-4A0A0B4J1K2 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav9-4A0A0B4J1K2 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
Trav9-4A0A0B4J1K2 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Trav9-4A0A0B4J1K2 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
Trav9-4A0A0B4J1K2 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trav9-4A0A0B4J1K2 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
Trav9-4A0A0B4J1K2 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Trav9-4A0A0B4J1K2 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Trav9-4A0A0B4J1K2 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trav9-4A0A0B4J1K2 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trav9-4A0A0B4J1K2 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC15.45■□□□□ 0.06
Trav9-4A0A0B4J1K2 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trav9-4A0A0B4J1K2 Gm7417-201ENSMUST00000192950 473 ntBASIC15.45■□□□□ 0.06
Trav9-4A0A0B4J1K2 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trav9-4A0A0B4J1K2 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Trav9-4A0A0B4J1K2 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trav9-4A0A0B4J1K2 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trav9-4A0A0B4J1K2 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trav9-4A0A0B4J1K2 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trav9-4A0A0B4J1K2 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC15.45■□□□□ 0.06
Trav9-4A0A0B4J1K2 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trav9-4A0A0B4J1K2 Gm4430-201ENSMUST00000192413 1943 ntBASIC15.45■□□□□ 0.06
Trav9-4A0A0B4J1K2 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC15.44■□□□□ 0.06
Trav9-4A0A0B4J1K2 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
Trav9-4A0A0B4J1K2 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trav9-4A0A0B4J1K2 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
Trav9-4A0A0B4J1K2 Gm14117-201ENSMUST00000122417 843 ntBASIC15.44■□□□□ 0.06
Trav9-4A0A0B4J1K2 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC15.44■□□□□ 0.06
Trav9-4A0A0B4J1K2 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trav9-4A0A0B4J1K2 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trav9-4A0A0B4J1K2 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC15.44■□□□□ 0.06
Trav9-4A0A0B4J1K2 Gm44949-201ENSMUST00000206423 1450 ntBASIC15.44■□□□□ 0.06
Trav9-4A0A0B4J1K2 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trav9-4A0A0B4J1K2 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trav9-4A0A0B4J1K2 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Trav9-4A0A0B4J1K2 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC15.43■□□□□ 0.06
Trav9-4A0A0B4J1K2 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC15.43■□□□□ 0.06
Trav9-4A0A0B4J1K2 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trav9-4A0A0B4J1K2 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC15.43■□□□□ 0.06
Trav9-4A0A0B4J1K2 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trav9-4A0A0B4J1K2 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC15.42■□□□□ 0.06
Trav9-4A0A0B4J1K2 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trav9-4A0A0B4J1K2 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Trav9-4A0A0B4J1K2 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 13.7 ms