Protein–RNA interactions for Protein: A0A0B4J1H2

Trbv13-3, T cell receptor beta, variable 13-3 (Fragment), mousemouse

Predictions only

Length 113 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv13-3A0A0B4J1H2 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC16.14■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC16.13■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Mir3960-201ENSMUST00000198213 73 ntBASIC16.13■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC16.13■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC16.12■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC16.12■□□□□ 0.17
Trbv13-3A0A0B4J1H2 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC16.12■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC16.12■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC16.12■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv13-3A0A0B4J1H2 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC16.12■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC16.11■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC16.11■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv13-3A0A0B4J1H2 AC154454.1-201ENSMUST00000225253 216 ntBASIC16.11■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Trbv13-3A0A0B4J1H2 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv13-3A0A0B4J1H2 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC16.1■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
Trbv13-3A0A0B4J1H2 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC16.1■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trbv13-3A0A0B4J1H2 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC16.09■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Trbv13-3A0A0B4J1H2 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC16.08■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC16.08■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trbv13-3A0A0B4J1H2 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trbv13-3A0A0B4J1H2 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trbv13-3A0A0B4J1H2 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trbv13-3A0A0B4J1H2 AC122428.2-201ENSMUST00000216321 1832 ntBASIC16.07■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC16.06■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC16.06■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC16.06■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trbv13-3A0A0B4J1H2 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC16.05■□□□□ 0.16
Trbv13-3A0A0B4J1H2 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trbv13-3A0A0B4J1H2 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC16.05■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC16.05■□□□□ 0.16
Trbv13-3A0A0B4J1H2 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms