Protein–RNA interactions for Protein: A0A075B652

Trav5-4, T cell receptor alpha variable 5-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5-4A0A075B652 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Trav5-4A0A075B652 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav5-4A0A075B652 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav5-4A0A075B652 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC17.16■□□□□ 0.34
Trav5-4A0A075B652 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC17.16■□□□□ 0.34
Trav5-4A0A075B652 AC116713.1-201ENSMUST00000215074 430 ntBASIC17.16■□□□□ 0.34
Trav5-4A0A075B652 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Trav5-4A0A075B652 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav5-4A0A075B652 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav5-4A0A075B652 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav5-4A0A075B652 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav5-4A0A075B652 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav5-4A0A075B652 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav5-4A0A075B652 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav5-4A0A075B652 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trav5-4A0A075B652 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
Trav5-4A0A075B652 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav5-4A0A075B652 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC17.15■□□□□ 0.34
Trav5-4A0A075B652 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav5-4A0A075B652 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav5-4A0A075B652 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav5-4A0A075B652 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav5-4A0A075B652 Kdm3b-204ENSMUST00000224715 2032 ntBASIC17.14■□□□□ 0.34
Trav5-4A0A075B652 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.34
Trav5-4A0A075B652 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Trav5-4A0A075B652 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Trav5-4A0A075B652 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trav5-4A0A075B652 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trav5-4A0A075B652 Nsd1-203ENSMUST00000224156 1149 ntBASIC17.14■□□□□ 0.33
Trav5-4A0A075B652 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav5-4A0A075B652 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav5-4A0A075B652 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC17.14■□□□□ 0.33
Trav5-4A0A075B652 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav5-4A0A075B652 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trav5-4A0A075B652 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav5-4A0A075B652 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trav5-4A0A075B652 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav5-4A0A075B652 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trav5-4A0A075B652 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav5-4A0A075B652 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
Trav5-4A0A075B652 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav5-4A0A075B652 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav5-4A0A075B652 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav5-4A0A075B652 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav5-4A0A075B652 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav5-4A0A075B652 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav5-4A0A075B652 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Trav5-4A0A075B652 Gm8093-201ENSMUST00000128935 1892 ntBASIC17.12■□□□□ 0.33
Trav5-4A0A075B652 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav5-4A0A075B652 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Trav5-4A0A075B652 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav5-4A0A075B652 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Trav5-4A0A075B652 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav5-4A0A075B652 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav5-4A0A075B652 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav5-4A0A075B652 Gm44949-201ENSMUST00000206423 1450 ntBASIC17.12■□□□□ 0.33
Trav5-4A0A075B652 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC17.11■□□□□ 0.33
Trav5-4A0A075B652 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC17.11■□□□□ 0.33
Trav5-4A0A075B652 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trav5-4A0A075B652 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav5-4A0A075B652 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav5-4A0A075B652 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC17.11■□□□□ 0.33
Trav5-4A0A075B652 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav5-4A0A075B652 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Trav5-4A0A075B652 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav5-4A0A075B652 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav5-4A0A075B652 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trav5-4A0A075B652 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trav5-4A0A075B652 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC17.1■□□□□ 0.33
Trav5-4A0A075B652 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Trav5-4A0A075B652 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC17.1■□□□□ 0.33
Trav5-4A0A075B652 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav5-4A0A075B652 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav5-4A0A075B652 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav5-4A0A075B652 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trav5-4A0A075B652 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav5-4A0A075B652 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav5-4A0A075B652 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav5-4A0A075B652 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav5-4A0A075B652 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trav5-4A0A075B652 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav5-4A0A075B652 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav5-4A0A075B652 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
Trav5-4A0A075B652 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trav5-4A0A075B652 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trav5-4A0A075B652 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Trav5-4A0A075B652 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC17.08■□□□□ 0.32
Trav5-4A0A075B652 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Trav5-4A0A075B652 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav5-4A0A075B652 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC17.07■□□□□ 0.32
Trav5-4A0A075B652 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trav5-4A0A075B652 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav5-4A0A075B652 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Trav5-4A0A075B652 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav5-4A0A075B652 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC17.07■□□□□ 0.32
Trav5-4A0A075B652 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC17.07■□□□□ 0.32
Trav5-4A0A075B652 Gm45444-201ENSMUST00000211394 898 ntBASIC17.07■□□□□ 0.32
Trav5-4A0A075B652 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav5-4A0A075B652 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav5-4A0A075B652 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 68.9 ms