Protein–RNA interactions for Protein: A0A075B5Z4

Trav1, T cell receptor alpha variable 1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav1A0A075B5Z4 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trav1A0A075B5Z4 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trav1A0A075B5Z4 Gm5921-201ENSMUST00000075898 882 ntBASIC19.3■□□□□ 0.68
Trav1A0A075B5Z4 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trav1A0A075B5Z4 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Trav1A0A075B5Z4 Snhg20-203ENSMUST00000182811 2153 ntBASIC19.3■□□□□ 0.68
Trav1A0A075B5Z4 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trav1A0A075B5Z4 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trav1A0A075B5Z4 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trav1A0A075B5Z4 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trav1A0A075B5Z4 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC19.3■□□□□ 0.68
Trav1A0A075B5Z4 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC19.3■□□□□ 0.68
Trav1A0A075B5Z4 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trav1A0A075B5Z4 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC19.29■□□□□ 0.68
Trav1A0A075B5Z4 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Trav1A0A075B5Z4 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC19.29■□□□□ 0.68
Trav1A0A075B5Z4 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC19.29■□□□□ 0.68
Trav1A0A075B5Z4 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trav1A0A075B5Z4 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Trav1A0A075B5Z4 AC122428.2-201ENSMUST00000216321 1832 ntBASIC19.28■□□□□ 0.68
Trav1A0A075B5Z4 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trav1A0A075B5Z4 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trav1A0A075B5Z4 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Trav1A0A075B5Z4 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Trav1A0A075B5Z4 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trav1A0A075B5Z4 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trav1A0A075B5Z4 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Trav1A0A075B5Z4 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trav1A0A075B5Z4 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trav1A0A075B5Z4 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Trav1A0A075B5Z4 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trav1A0A075B5Z4 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trav1A0A075B5Z4 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Trav1A0A075B5Z4 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trav1A0A075B5Z4 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
Trav1A0A075B5Z4 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trav1A0A075B5Z4 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trav1A0A075B5Z4 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trav1A0A075B5Z4 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trav1A0A075B5Z4 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trav1A0A075B5Z4 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Trav1A0A075B5Z4 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trav1A0A075B5Z4 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Trav1A0A075B5Z4 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trav1A0A075B5Z4 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Trav1A0A075B5Z4 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trav1A0A075B5Z4 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trav1A0A075B5Z4 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trav1A0A075B5Z4 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trav1A0A075B5Z4 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Trav1A0A075B5Z4 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Trav1A0A075B5Z4 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Trav1A0A075B5Z4 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Trav1A0A075B5Z4 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trav1A0A075B5Z4 Gm10620-201ENSMUST00000098379 1332 ntBASIC19.25■□□□□ 0.67
Trav1A0A075B5Z4 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav1A0A075B5Z4 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav1A0A075B5Z4 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav1A0A075B5Z4 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav1A0A075B5Z4 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav1A0A075B5Z4 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav1A0A075B5Z4 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trav1A0A075B5Z4 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trav1A0A075B5Z4 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC19.23■□□□□ 0.67
Trav1A0A075B5Z4 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trav1A0A075B5Z4 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC19.23■□□□□ 0.67
Trav1A0A075B5Z4 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trav1A0A075B5Z4 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Trav1A0A075B5Z4 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trav1A0A075B5Z4 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trav1A0A075B5Z4 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC19.22■□□□□ 0.67
Trav1A0A075B5Z4 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC19.22■□□□□ 0.67
Trav1A0A075B5Z4 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Trav1A0A075B5Z4 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trav1A0A075B5Z4 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trav1A0A075B5Z4 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav1A0A075B5Z4 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav1A0A075B5Z4 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Trav1A0A075B5Z4 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav1A0A075B5Z4 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC19.21■□□□□ 0.67
Trav1A0A075B5Z4 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav1A0A075B5Z4 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav1A0A075B5Z4 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Trav1A0A075B5Z4 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav1A0A075B5Z4 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Trav1A0A075B5Z4 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav1A0A075B5Z4 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Trav1A0A075B5Z4 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
Trav1A0A075B5Z4 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trav1A0A075B5Z4 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trav1A0A075B5Z4 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trav1A0A075B5Z4 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC19.2■□□□□ 0.66
Trav1A0A075B5Z4 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trav1A0A075B5Z4 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trav1A0A075B5Z4 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trav1A0A075B5Z4 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC19.2■□□□□ 0.66
Trav1A0A075B5Z4 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
Trav1A0A075B5Z4 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trav1A0A075B5Z4 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trav1A0A075B5Z4 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms