Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sox9Q04887 Gm44241-201ENSMUST00000203230 1662 ntBASIC12.44□□□□□ -0.42
Sox9Q04887 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sox9Q04887 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sox9Q04887 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sox9Q04887 CT009489.1-201ENSMUST00000227740 1893 ntBASIC12.44□□□□□ -0.42
Sox9Q04887 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sox9Q04887 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sox9Q04887 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Sox9Q04887 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sox9Q04887 Ccndbp1-203ENSMUST00000099489 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sox9Q04887 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sox9Q04887 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sox9Q04887 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sox9Q04887 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sox9Q04887 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sox9Q04887 Samd13-202ENSMUST00000125965 1590 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Sox9Q04887 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sox9Q04887 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sox9Q04887 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sox9Q04887 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sox9Q04887 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC12.43□□□□□ -0.42
Sox9Q04887 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sox9Q04887 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sox9Q04887 Tmem237-205ENSMUST00000186794 1533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sox9Q04887 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sox9Q04887 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sox9Q04887 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sox9Q04887 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC12.43□□□□□ -0.42
Sox9Q04887 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sox9Q04887 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sox9Q04887 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sox9Q04887 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sox9Q04887 Gm12453-201ENSMUST00000121981 331 ntBASIC12.43□□□□□ -0.42
Sox9Q04887 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC12.43□□□□□ -0.42
Sox9Q04887 Gm6390-201ENSMUST00000215034 589 ntBASIC12.43□□□□□ -0.42
Sox9Q04887 Olfr692-202ENSMUST00000217827 1126 ntBASIC12.43□□□□□ -0.42
Sox9Q04887 Gm10371-202ENSMUST00000228010 1081 ntBASIC12.43□□□□□ -0.42
Sox9Q04887 Olfr692-201ENSMUST00000098152 1126 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Sox9Q04887 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Sox9Q04887 Zfp1-202ENSMUST00000211926 1409 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sox9Q04887 AC166836.1-201ENSMUST00000219933 1795 ntBASIC12.43□□□□□ -0.42
Sox9Q04887 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sox9Q04887 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC12.43□□□□□ -0.42
Sox9Q04887 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sox9Q04887 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sox9Q04887 Gm36970-201ENSMUST00000193688 1859 ntBASIC12.42□□□□□ -0.42
Sox9Q04887 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Nr2f2-202ENSMUST00000089565 1664 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Gm15622-201ENSMUST00000143025 1464 ntTSL 5 BASIC12.42□□□□□ -0.42
Sox9Q04887 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Sox9Q04887 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Gm11578-201ENSMUST00000118530 459 ntBASIC12.42□□□□□ -0.42
Sox9Q04887 Gm12856-201ENSMUST00000119471 1293 ntBASIC12.42□□□□□ -0.42
Sox9Q04887 Spaca9-202ENSMUST00000124840 699 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Gm15985-201ENSMUST00000137731 343 ntTSL 3 BASIC12.42□□□□□ -0.42
Sox9Q04887 Aknaos-201ENSMUST00000144095 1104 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Gm17214-201ENSMUST00000164501 541 ntBASIC12.42□□□□□ -0.42
Sox9Q04887 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC12.42□□□□□ -0.42
Sox9Q04887 Isoc2b-205ENSMUST00000208816 820 ntAPPRIS P1 TSL 3 BASIC12.42□□□□□ -0.42
Sox9Q04887 Retnla-201ENSMUST00000023329 598 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Gm16380-201ENSMUST00000077997 478 ntBASIC12.42□□□□□ -0.42
Sox9Q04887 Gm43858-201ENSMUST00000199418 1778 ntBASIC12.42□□□□□ -0.42
Sox9Q04887 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Srsf5-205ENSMUST00000110356 1568 ntAPPRIS P3 TSL 5 BASIC12.42□□□□□ -0.42
Sox9Q04887 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Sox9Q04887 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC12.42□□□□□ -0.42
Sox9Q04887 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC12.42□□□□□ -0.42
Sox9Q04887 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sox9Q04887 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Sox9Q04887 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Sox9Q04887 Gm45743-201ENSMUST00000212701 2795 ntBASIC12.41□□□□□ -0.42
Sox9Q04887 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sox9Q04887 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC12.41□□□□□ -0.42
Sox9Q04887 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sox9Q04887 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sox9Q04887 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sox9Q04887 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sox9Q04887 Gm10152-201ENSMUST00000193475 1344 ntBASIC12.41□□□□□ -0.42
Sox9Q04887 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Sox9Q04887 Spdye4a-203ENSMUST00000195900 1496 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms