Protein–RNA interactions for Protein: Q8C4J0

Ccdc60, Coiled-coil domain-containing protein 60, mousemouse

Predictions only

Length 545 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc60Q8C4J0 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ccdc60Q8C4J0 Gm12380-201ENSMUST00000119012 544 ntBASIC15.32■□□□□ 0.04
Ccdc60Q8C4J0 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC15.32■□□□□ 0.04
Ccdc60Q8C4J0 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC15.32■□□□□ 0.04
Ccdc60Q8C4J0 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Ccdc60Q8C4J0 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ccdc60Q8C4J0 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ccdc60Q8C4J0 Gm5525-201ENSMUST00000190438 1312 ntBASIC15.32■□□□□ 0.04
Ccdc60Q8C4J0 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC15.32■□□□□ 0.04
Ccdc60Q8C4J0 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Ccdc60Q8C4J0 Fbln7-202ENSMUST00000110324 3228 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Ccdc60Q8C4J0 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ccdc60Q8C4J0 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ccdc60Q8C4J0 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Ccdc60Q8C4J0 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC15.32■□□□□ 0.04
Ccdc60Q8C4J0 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Mmel1-207ENSMUST00000163732 2935 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Gm26286-201ENSMUST00000104166 134 ntBASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Gstp-ps-201ENSMUST00000195526 631 ntBASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 AC121960.1-201ENSMUST00000227982 564 ntBASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Axl-202ENSMUST00000085948 3899 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Zbtb1-201ENSMUST00000042779 12190 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Gm7049-201ENSMUST00000223520 1712 ntBASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Gm45428-201ENSMUST00000209619 1789 ntBASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Qrsl1-201ENSMUST00000020012 1981 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Accsl-201ENSMUST00000099690 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccdc60Q8C4J0 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Gm15236-201ENSMUST00000117309 379 ntBASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Gm15711-201ENSMUST00000118889 535 ntBASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Gm5846-201ENSMUST00000193146 1414 ntBASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 AC093022.4-203ENSMUST00000228523 2657 ntBASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 B3gat2-201ENSMUST00000063663 5655 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC15.3■□□□□ 0.04
Ccdc60Q8C4J0 Nicn1-201ENSMUST00000035227 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccdc60Q8C4J0 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 29.5 ms