Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Gm43520-201ENSMUST00000197996 164 ntBASIC13.33□□□□□ -0.28
Col6a1Q04857 Gm7902-201ENSMUST00000198842 947 ntBASIC13.33□□□□□ -0.28
Col6a1Q04857 Gm43634-201ENSMUST00000202671 675 ntTSL 3 BASIC13.33□□□□□ -0.28
Col6a1Q04857 AC159376.1-201ENSMUST00000218504 630 ntBASIC13.33□□□□□ -0.28
Col6a1Q04857 Cmbl-201ENSMUST00000070918 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col6a1Q04857 Rpl15-201ENSMUST00000079419 883 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
Col6a1Q04857 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col6a1Q04857 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col6a1Q04857 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Col6a1Q04857 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col6a1Q04857 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col6a1Q04857 Gm16364-201ENSMUST00000153722 1313 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col6a1Q04857 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col6a1Q04857 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC13.33□□□□□ -0.28
Col6a1Q04857 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col6a1Q04857 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col6a1Q04857 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col6a1Q04857 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col6a1Q04857 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col6a1Q04857 Zc3h4-201ENSMUST00000098789 6039 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.28
Col6a1Q04857 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col6a1Q04857 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Col6a1Q04857 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col6a1Q04857 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC13.32□□□□□ -0.28
Col6a1Q04857 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Col6a1Q04857 Ccdc60-202ENSMUST00000086483 2168 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col6a1Q04857 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col6a1Q04857 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col6a1Q04857 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
Col6a1Q04857 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col6a1Q04857 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC13.32□□□□□ -0.28
Col6a1Q04857 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC13.32□□□□□ -0.28
Col6a1Q04857 Gm24934-201ENSMUST00000103764 111 ntBASIC13.32□□□□□ -0.28
Col6a1Q04857 Gm16071-201ENSMUST00000119589 793 ntBASIC13.32□□□□□ -0.28
Col6a1Q04857 Mrps17-204ENSMUST00000119604 1208 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col6a1Q04857 Gm15595-201ENSMUST00000120840 961 ntBASIC13.32□□□□□ -0.28
Col6a1Q04857 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC13.32□□□□□ -0.28
Col6a1Q04857 Gm22877-201ENSMUST00000175451 105 ntBASIC13.32□□□□□ -0.28
Col6a1Q04857 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col6a1Q04857 Gm17826-201ENSMUST00000189720 798 ntBASIC13.32□□□□□ -0.28
Col6a1Q04857 Gm44329-201ENSMUST00000197469 112 ntBASIC13.32□□□□□ -0.28
Col6a1Q04857 Bcap31-201ENSMUST00000002091 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col6a1Q04857 1700012D14Rik-204ENSMUST00000210788 547 ntTSL 3 BASIC13.32□□□□□ -0.28
Col6a1Q04857 Cinp-204ENSMUST00000221102 536 ntTSL 2 BASIC13.32□□□□□ -0.28
Col6a1Q04857 AC151275.1-201ENSMUST00000224870 585 ntBASIC13.32□□□□□ -0.28
Col6a1Q04857 Gbgt1-201ENSMUST00000028172 1084 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col6a1Q04857 Gm6430-201ENSMUST00000054664 1248 ntBASIC13.32□□□□□ -0.28
Col6a1Q04857 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Col6a1Q04857 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col6a1Q04857 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Col6a1Q04857 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col6a1Q04857 Oard1-202ENSMUST00000167180 1324 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col6a1Q04857 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col6a1Q04857 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col6a1Q04857 Gm44094-201ENSMUST00000204703 2030 ntBASIC13.32□□□□□ -0.28
Col6a1Q04857 Alx4-202ENSMUST00000111254 7056 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Col6a1Q04857 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Col6a1Q04857 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col6a1Q04857 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC13.32□□□□□ -0.28
Col6a1Q04857 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col6a1Q04857 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col6a1Q04857 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Col6a1Q04857 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC13.31□□□□□ -0.28
Col6a1Q04857 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Col6a1Q04857 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC13.31□□□□□ -0.28
Col6a1Q04857 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 AC123834.1-201ENSMUST00000225346 2043 ntBASIC13.31□□□□□ -0.28
Col6a1Q04857 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Gm9072-201ENSMUST00000218390 1514 ntBASIC13.31□□□□□ -0.28
Col6a1Q04857 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Rffl-205ENSMUST00000103218 1264 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Gm11980-201ENSMUST00000121445 986 ntBASIC13.31□□□□□ -0.28
Col6a1Q04857 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 4930562C15Rik-202ENSMUST00000171105 1299 ntTSL 2 BASIC13.31□□□□□ -0.28
Col6a1Q04857 Mir8115-201ENSMUST00000184992 119 ntBASIC13.31□□□□□ -0.28
Col6a1Q04857 Gm29083-201ENSMUST00000189205 733 ntTSL 3 BASIC13.31□□□□□ -0.28
Col6a1Q04857 Dnajb6-212ENSMUST00000198694 505 ntTSL 3 BASIC13.31□□□□□ -0.28
Col6a1Q04857 Gm5298-201ENSMUST00000201122 892 ntBASIC13.31□□□□□ -0.28
Col6a1Q04857 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC13.31□□□□□ -0.28
Col6a1Q04857 AC153954.1-201ENSMUST00000216959 255 ntBASIC13.31□□□□□ -0.28
Col6a1Q04857 AC126799.1-201ENSMUST00000221976 246 ntBASIC13.31□□□□□ -0.28
Col6a1Q04857 Psmg2-201ENSMUST00000025418 1059 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Try10-201ENSMUST00000072103 860 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Col6a1Q04857 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Col6a1Q04857 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Col6a1Q04857 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
Col6a1Q04857 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 37.3 ms