Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.17
Traf1P39428 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.17
Traf1P39428 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Traf1P39428 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Traf1P39428 AC122840.1-201ENSMUST00000220915 3334 ntBASIC13.96□□□□□ -0.17
Traf1P39428 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
Traf1P39428 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Traf1P39428 Anxa8-201ENSMUST00000022519 1880 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Traf1P39428 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Traf1P39428 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
Traf1P39428 Gm7722-201ENSMUST00000120646 741 ntBASIC13.96□□□□□ -0.17
Traf1P39428 Gm8546-201ENSMUST00000178288 1264 ntBASIC13.96□□□□□ -0.17
Traf1P39428 Gm4482-201ENSMUST00000200876 742 ntBASIC13.96□□□□□ -0.17
Traf1P39428 Gm7207-201ENSMUST00000211575 1067 ntBASIC13.96□□□□□ -0.17
Traf1P39428 Gm807-202ENSMUST00000224929 408 ntBASIC13.96□□□□□ -0.17
Traf1P39428 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Traf1P39428 Olfr140-202ENSMUST00000111506 3449 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
Traf1P39428 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
Traf1P39428 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Traf1P39428 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Traf1P39428 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Traf1P39428 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC13.96□□□□□ -0.18
Traf1P39428 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Traf1P39428 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Traf1P39428 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
Traf1P39428 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
Traf1P39428 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC13.96□□□□□ -0.18
Traf1P39428 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Traf1P39428 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.18
Traf1P39428 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Traf1P39428 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
Traf1P39428 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Traf1P39428 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
Traf1P39428 AC091458.1-201ENSMUST00000220902 1361 ntBASIC13.96□□□□□ -0.18
Traf1P39428 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
Traf1P39428 Gm37014-201ENSMUST00000194723 2253 ntBASIC13.95□□□□□ -0.18
Traf1P39428 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Traf1P39428 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Traf1P39428 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC13.95□□□□□ -0.18
Traf1P39428 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Traf1P39428 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Traf1P39428 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Traf1P39428 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Traf1P39428 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Traf1P39428 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC13.95□□□□□ -0.18
Traf1P39428 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Traf1P39428 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
Traf1P39428 Gm24891-201ENSMUST00000104391 136 ntBASIC13.95□□□□□ -0.18
Traf1P39428 Gm14724-201ENSMUST00000118400 537 ntBASIC13.95□□□□□ -0.18
Traf1P39428 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC13.95□□□□□ -0.18
Traf1P39428 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Traf1P39428 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC13.95□□□□□ -0.18
Traf1P39428 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC13.95□□□□□ -0.18
Traf1P39428 Gm3332-201ENSMUST00000189337 928 ntBASIC13.95□□□□□ -0.18
Traf1P39428 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Traf1P39428 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Traf1P39428 Gm43947-201ENSMUST00000203019 959 ntBASIC13.95□□□□□ -0.18
Traf1P39428 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Traf1P39428 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Traf1P39428 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
Traf1P39428 Gm32036-201ENSMUST00000221484 2638 ntTSL 2 BASIC13.95□□□□□ -0.18
Traf1P39428 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Traf1P39428 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Traf1P39428 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Traf1P39428 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Traf1P39428 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Traf1P39428 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Traf1P39428 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Traf1P39428 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Traf1P39428 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
Traf1P39428 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Traf1P39428 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Traf1P39428 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Traf1P39428 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Traf1P39428 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Traf1P39428 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Traf1P39428 Cacna1c-227ENSMUST00000220022 7765 ntTSL 5 BASIC13.94□□□□□ -0.18
Traf1P39428 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC13.94□□□□□ -0.18
Traf1P39428 Gm43051-201ENSMUST00000201096 2678 ntBASIC13.94□□□□□ -0.18
Traf1P39428 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Traf1P39428 Gm14058-201ENSMUST00000116082 735 ntBASIC13.94□□□□□ -0.18
Traf1P39428 Gm14263-201ENSMUST00000117955 746 ntBASIC13.94□□□□□ -0.18
Traf1P39428 Gm14247-201ENSMUST00000120950 237 ntBASIC13.94□□□□□ -0.18
Traf1P39428 Gm4034-201ENSMUST00000187674 480 ntBASIC13.94□□□□□ -0.18
Traf1P39428 Gm2965-201ENSMUST00000198365 343 ntBASIC13.94□□□□□ -0.18
Traf1P39428 Gm18393-201ENSMUST00000208349 1131 ntBASIC13.94□□□□□ -0.18
Traf1P39428 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
Traf1P39428 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Traf1P39428 AC098716.1-201ENSMUST00000213527 703 ntBASIC13.94□□□□□ -0.18
Traf1P39428 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Traf1P39428 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC13.94□□□□□ -0.18
Traf1P39428 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Traf1P39428 Ankzf1-208ENSMUST00000152233 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Traf1P39428 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Traf1P39428 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Traf1P39428 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Traf1P39428 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Traf1P39428 Gm9361-201ENSMUST00000198695 1507 ntBASIC13.94□□□□□ -0.18
Traf1P39428 AC160405.1-201ENSMUST00000218207 1545 ntBASIC13.94□□□□□ -0.18
Traf1P39428 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms