Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 4931428L18Rik-202ENSMUST00000135245 889 ntAPPRIS P5 TSL 1 (best) BASIC13.01□□□□□ -0.33
RaraP11416 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
RaraP11416 Gm38002-201ENSMUST00000193255 180 ntBASIC13.01□□□□□ -0.33
RaraP11416 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
RaraP11416 Gm17931-201ENSMUST00000208132 634 ntBASIC13.01□□□□□ -0.33
RaraP11416 AC140406.1-201ENSMUST00000226481 465 ntBASIC13.01□□□□□ -0.33
RaraP11416 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
RaraP11416 Klk1b7-ps-201ENSMUST00000078897 448 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
RaraP11416 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC13.01□□□□□ -0.33
RaraP11416 Gm4864-201ENSMUST00000219894 1461 ntBASIC13.01□□□□□ -0.33
RaraP11416 Asic5-201ENSMUST00000029641 1657 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
RaraP11416 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
RaraP11416 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
RaraP11416 Gm19792-201ENSMUST00000222522 2021 ntTSL 5 BASIC13.01□□□□□ -0.33
RaraP11416 Gm5608-201ENSMUST00000210253 2290 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
RaraP11416 Rftn1-202ENSMUST00000113195 2385 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
RaraP11416 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
RaraP11416 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
RaraP11416 Sertm1-201ENSMUST00000070342 3083 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
RaraP11416 Stxbp5l-201ENSMUST00000023526 3344 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
RaraP11416 Vwa7-201ENSMUST00000007245 4313 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
RaraP11416 Tsga10-202ENSMUST00000088072 3837 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
RaraP11416 Tpx2-201ENSMUST00000028969 3654 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RaraP11416 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
RaraP11416 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RaraP11416 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RaraP11416 Serinc4-202ENSMUST00000110613 2240 ntTSL 1 (best) BASIC13□□□□□ -0.33
RaraP11416 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC13□□□□□ -0.33
RaraP11416 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC13□□□□□ -0.33
RaraP11416 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC13□□□□□ -0.33
RaraP11416 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
RaraP11416 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
RaraP11416 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RaraP11416 Dpysl5-201ENSMUST00000088081 5022 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RaraP11416 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC13□□□□□ -0.33
RaraP11416 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC13□□□□□ -0.33
RaraP11416 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
RaraP11416 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC13□□□□□ -0.33
RaraP11416 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC13□□□□□ -0.33
RaraP11416 Gm43118-201ENSMUST00000199149 775 ntBASIC13□□□□□ -0.33
RaraP11416 5830411K02Rik-201ENSMUST00000200000 997 ntBASIC13□□□□□ -0.33
RaraP11416 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC13□□□□□ -0.33
RaraP11416 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RaraP11416 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC13□□□□□ -0.33
RaraP11416 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RaraP11416 Grm5-201ENSMUST00000107263 3516 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
RaraP11416 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RaraP11416 Aplp2-209ENSMUST00000217641 3462 ntTSL 1 (best) BASIC13□□□□□ -0.33
RaraP11416 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RaraP11416 Sash3-201ENSMUST00000033427 2677 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RaraP11416 Mier3-201ENSMUST00000047412 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
RaraP11416 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
RaraP11416 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
RaraP11416 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RaraP11416 Cbx7-201ENSMUST00000089293 3388 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
RaraP11416 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC13□□□□□ -0.33
RaraP11416 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
RaraP11416 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
RaraP11416 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
RaraP11416 Gm37348-201ENSMUST00000193104 1789 ntBASIC12.99□□□□□ -0.33
RaraP11416 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
RaraP11416 Stra6-202ENSMUST00000085677 2725 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RaraP11416 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RaraP11416 Unk-201ENSMUST00000021116 3735 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
RaraP11416 Srsf5-205ENSMUST00000110356 1568 ntAPPRIS P3 TSL 5 BASIC12.99□□□□□ -0.33
RaraP11416 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RaraP11416 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
RaraP11416 Galnt9-202ENSMUST00000165856 1541 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
RaraP11416 Psapl1-201ENSMUST00000052224 2548 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
RaraP11416 Gm20658-201ENSMUST00000175871 1489 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
RaraP11416 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RaraP11416 Gm42498-201ENSMUST00000199981 1372 ntBASIC12.99□□□□□ -0.33
RaraP11416 Eps8l2-201ENSMUST00000026577 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RaraP11416 Gm17230-201ENSMUST00000171194 3942 ntBASIC12.99□□□□□ -0.33
RaraP11416 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC12.99□□□□□ -0.33
RaraP11416 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC12.99□□□□□ -0.33
RaraP11416 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC12.99□□□□□ -0.33
RaraP11416 Snora78-201ENSMUST00000158630 128 ntBASIC12.99□□□□□ -0.33
RaraP11416 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RaraP11416 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC12.99□□□□□ -0.33
RaraP11416 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC12.99□□□□□ -0.33
RaraP11416 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC12.99□□□□□ -0.33
RaraP11416 AC163667.3-201ENSMUST00000225774 222 ntBASIC12.99□□□□□ -0.33
RaraP11416 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RaraP11416 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RaraP11416 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
RaraP11416 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
RaraP11416 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RaraP11416 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
RaraP11416 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RaraP11416 Zfp689-201ENSMUST00000053392 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RaraP11416 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RaraP11416 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RaraP11416 Cyp4b1-201ENSMUST00000102707 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RaraP11416 Anks1b-224ENSMUST00000182960 3397 ntTSL 5 BASIC12.99□□□□□ -0.33
RaraP11416 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
RaraP11416 Myo18a-210ENSMUST00000130305 5450 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
RaraP11416 Apbb1-201ENSMUST00000081165 2530 ntAPPRIS ALT1 TSL 5 BASIC12.99□□□□□ -0.33
RaraP11416 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC12.99□□□□□ -0.33
RaraP11416 Evi5l-208ENSMUST00000176825 3728 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 124.5 ms