Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col6a3E9PWQ3 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC11.65□□□□□ -0.54
Col6a3E9PWQ3 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col6a3E9PWQ3 Gps2-202ENSMUST00000072581 1311 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
Col6a3E9PWQ3 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col6a3E9PWQ3 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col6a3E9PWQ3 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.55
Col6a3E9PWQ3 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Gm15664-201ENSMUST00000160167 184 ntBASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 n-R5s130-201ENSMUST00000178128 119 ntBASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Gm24312-201ENSMUST00000178677 119 ntBASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 n-R5s106-201ENSMUST00000179060 119 ntBASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 n-R5s118-201ENSMUST00000179887 119 ntBASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 AC132881.1-201ENSMUST00000223780 1062 ntBASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Gm11437-201ENSMUST00000050771 1239 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Gm15965-201ENSMUST00000123318 1428 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Gm15197-201ENSMUST00000120526 478 ntBASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Gm13031-201ENSMUST00000140501 924 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Gm13056-201ENSMUST00000142429 564 ntTSL 2 BASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Gm21964-201ENSMUST00000178785 936 ntTSL 5 BASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Crip1-206ENSMUST00000200553 516 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Gm7210-201ENSMUST00000209309 1067 ntBASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 AC241616.1-201ENSMUST00000213741 166 ntBASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 AC102847.1-202ENSMUST00000226313 1245 ntBASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Gm6189-201ENSMUST00000164487 2082 ntBASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Ighv1-22-201ENSMUST00000103507 351 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Gm9369-201ENSMUST00000196009 733 ntBASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Gm45388-201ENSMUST00000209922 1132 ntTSL 5 BASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 AC107711.3-201ENSMUST00000228939 1035 ntBASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC11.64□□□□□ -0.55
Col6a3E9PWQ3 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Jaml-201ENSMUST00000050020 2461 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Dpep1-201ENSMUST00000019422 2236 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Rpl15-ps5-201ENSMUST00000205636 605 ntBASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Yipf7-201ENSMUST00000031045 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Gm38192-201ENSMUST00000194364 1847 ntBASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Gm45199-201ENSMUST00000207640 1507 ntBASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Gm12240-201ENSMUST00000120178 229 ntBASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 C330021F23Rik-204ENSMUST00000151633 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Gm6291-201ENSMUST00000179994 309 ntBASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Gm37819-201ENSMUST00000194626 1065 ntBASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Gm38301-201ENSMUST00000195573 543 ntBASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Iqcf1-201ENSMUST00000085114 613 ntAPPRIS P4 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 C330021F23Rik-201ENSMUST00000086479 1111 ntAPPRIS P2 TSL 5 BASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Ap5s1-201ENSMUST00000089506 1432 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Alox5-207ENSMUST00000170186 1929 ntTSL 5 BASIC11.63□□□□□ -0.55
Col6a3E9PWQ3 Plxna4os3-201ENSMUST00000127668 269 ntTSL 3 BASIC11.62□□□□□ -0.55
Col6a3E9PWQ3 Mrpl20-202ENSMUST00000130188 442 ntTSL 3 BASIC11.62□□□□□ -0.55
Col6a3E9PWQ3 Gm16301-201ENSMUST00000161959 295 ntBASIC11.62□□□□□ -0.55
Col6a3E9PWQ3 Gm7741-201ENSMUST00000181445 989 ntBASIC11.62□□□□□ -0.55
Col6a3E9PWQ3 Gm26611-201ENSMUST00000181449 785 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Col6a3E9PWQ3 AC155293.1-201ENSMUST00000219793 1026 ntBASIC11.62□□□□□ -0.55
Col6a3E9PWQ3 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col6a3E9PWQ3 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col6a3E9PWQ3 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col6a3E9PWQ3 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Col6a3E9PWQ3 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col6a3E9PWQ3 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col6a3E9PWQ3 Usp2-208ENSMUST00000177054 2370 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Col6a3E9PWQ3 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Col6a3E9PWQ3 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC11.62□□□□□ -0.55
Col6a3E9PWQ3 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col6a3E9PWQ3 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Col6a3E9PWQ3 Shf-205ENSMUST00000121237 882 ntTSL 3 BASIC11.62□□□□□ -0.55
Col6a3E9PWQ3 1700109G14Rik-202ENSMUST00000188538 754 ntTSL 3 BASIC11.62□□□□□ -0.55
Col6a3E9PWQ3 AC124772.3-201ENSMUST00000222535 575 ntBASIC11.62□□□□□ -0.55
Col6a3E9PWQ3 CT010505.2-201ENSMUST00000227918 998 ntBASIC11.62□□□□□ -0.55
Col6a3E9PWQ3 Clpsl2-201ENSMUST00000025061 442 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 66.1 ms