Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Grm1-202ENSMUST00000105560 4265 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Srgap3-202ENSMUST00000088373 8887 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Bod1l-201ENSMUST00000050556 10540 ntAPPRIS P3 TSL 5 BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Kansl3-201ENSMUST00000010597 4663 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Gm28450-201ENSMUST00000187349 638 ntBASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Gm45224-201ENSMUST00000208203 414 ntBASIC11.23□□□□□ -0.61
Cdc40Q9DC48 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Gm39404-201ENSMUST00000216350 313 ntBASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Gm45342-201ENSMUST00000210903 1363 ntBASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Pcif1-201ENSMUST00000041643 5772 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Gm13722-201ENSMUST00000117964 3066 ntBASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Gypa-201ENSMUST00000063359 1848 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Osbp2-201ENSMUST00000070552 4097 ntAPPRIS P3 TSL 5 BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Lamb3-209ENSMUST00000194677 4867 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Cdc40Q9DC48 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Mapk8ip3-204ENSMUST00000117509 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Gm13296-201ENSMUST00000117854 997 ntBASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Gm12217-201ENSMUST00000118858 696 ntBASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Gm4760-201ENSMUST00000119663 1030 ntBASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 B9d1os-201ENSMUST00000137010 674 ntBASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Gm8494-201ENSMUST00000178171 1233 ntBASIC11.22□□□□□ -0.61
Cdc40Q9DC48 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Mir6979-201ENSMUST00000183927 56 ntBASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Gm9445-201ENSMUST00000207454 1285 ntBASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Nsd1-205ENSMUST00000224693 852 ntBASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Sh3tc1-201ENSMUST00000070203 4549 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Mob3b-201ENSMUST00000102975 6030 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Paupar-201ENSMUST00000194826 3482 ntBASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Vmn1r45-207ENSMUST00000228492 2849 ntBASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC11.22□□□□□ -0.61
Cdc40Q9DC48 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.61
Cdc40Q9DC48 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.61
Cdc40Q9DC48 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms