Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx56Q9D0R4 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx56Q9D0R4 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx56Q9D0R4 AC164426.2-201ENSMUST00000225993 2492 ntBASIC12.7□□□□□ -0.38
Ddx56Q9D0R4 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx56Q9D0R4 Gm12940-202ENSMUST00000137236 1970 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx56Q9D0R4 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx56Q9D0R4 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC12.7□□□□□ -0.38
Ddx56Q9D0R4 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx56Q9D0R4 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC12.7□□□□□ -0.38
Ddx56Q9D0R4 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx56Q9D0R4 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx56Q9D0R4 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx56Q9D0R4 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx56Q9D0R4 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx56Q9D0R4 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx56Q9D0R4 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC12.7□□□□□ -0.38
Ddx56Q9D0R4 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Ddx56Q9D0R4 Armt1-203ENSMUST00000118544 5044 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Tmem178b-201ENSMUST00000061740 3178 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Ap1g2-201ENSMUST00000036041 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Gm45428-201ENSMUST00000209619 1789 ntBASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Syt16-203ENSMUST00000221220 8156 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Gm24255-201ENSMUST00000104481 128 ntBASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Gm15198-201ENSMUST00000117283 177 ntBASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Gm14723-201ENSMUST00000118686 215 ntBASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Mir1938-201ENSMUST00000158746 100 ntBASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Gm43758-201ENSMUST00000199500 367 ntBASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Gm43822-201ENSMUST00000200285 476 ntBASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Gm17931-201ENSMUST00000208132 634 ntBASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Gzmn-202ENSMUST00000225535 989 ntBASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Epm2aip1-201ENSMUST00000060711 7149 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Mcf2l-203ENSMUST00000110866 5108 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Ddx56Q9D0R4 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Egfem1-202ENSMUST00000119598 2687 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 AC126257.1-201ENSMUST00000213195 1536 ntBASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Arhgap20-204ENSMUST00000130405 3881 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Gm11564-201ENSMUST00000105055 691 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Gm14381-201ENSMUST00000122105 414 ntBASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Gm43179-201ENSMUST00000198797 275 ntBASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Gm45691-201ENSMUST00000206905 1120 ntBASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Gm18615-201ENSMUST00000222919 1031 ntBASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Gm8155-201ENSMUST00000216363 1612 ntBASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 AC108858.2-201ENSMUST00000228186 1425 ntBASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Gm6015-201ENSMUST00000217493 1586 ntBASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Ddx56Q9D0R4 E330021D16Rik-203ENSMUST00000204830 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 AC138329.2-201ENSMUST00000225579 1842 ntBASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC12.67□□□□□ -0.38
Ddx56Q9D0R4 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 56.8 ms