Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 AC169511.2-201ENSMUST00000226674 2063 ntBASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Rnf183-203ENSMUST00000107455 1432 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Cav2-202ENSMUST00000115459 974 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 4930583K01Rik-201ENSMUST00000138180 925 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Ighv1-60-201ENSMUST00000195816 405 ntBASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Dnajb6-212ENSMUST00000198694 505 ntTSL 3 BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 4930448E22Rik-203ENSMUST00000215349 299 ntTSL 3 BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 AC112945.1-201ENSMUST00000226413 514 ntBASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Gm18983-201ENSMUST00000222884 2729 ntBASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Gm7224-201ENSMUST00000121359 2066 ntBASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Usp40Q8BWR4 Nr2f2-202ENSMUST00000089565 1664 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Psmc2-201ENSMUST00000030769 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Usp40Q8BWR4 CT009489.1-201ENSMUST00000227740 1893 ntBASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Cela3b-201ENSMUST00000102522 926 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Gm15172-201ENSMUST00000118945 1046 ntBASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Dmrtc1a-204ENSMUST00000121197 1067 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Gm29237-201ENSMUST00000186216 448 ntTSL 5 BASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Gm38151-201ENSMUST00000195085 289 ntBASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Gm43520-201ENSMUST00000197996 164 ntBASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Gm44980-201ENSMUST00000205826 314 ntBASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Gm18636-201ENSMUST00000218846 1066 ntBASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Ormdl2-201ENSMUST00000026409 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC16.46■□□□□ 0.23
Usp40Q8BWR4 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Usp40Q8BWR4 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.22
Usp40Q8BWR4 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Usp40Q8BWR4 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
Usp40Q8BWR4 Zfp68-201ENSMUST00000063262 2254 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp40Q8BWR4 Rad51c-201ENSMUST00000007790 1632 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Usp40Q8BWR4 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp40Q8BWR4 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp40Q8BWR4 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Usp40Q8BWR4 Gm11783-201ENSMUST00000119549 885 ntBASIC16.45■□□□□ 0.22
Usp40Q8BWR4 Gm3150-201ENSMUST00000166418 204 ntBASIC16.45■□□□□ 0.22
Usp40Q8BWR4 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Usp40Q8BWR4 Gm9136-201ENSMUST00000193368 454 ntBASIC16.45■□□□□ 0.22
Usp40Q8BWR4 Fgf5-202ENSMUST00000200059 600 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Usp40Q8BWR4 Gm45484-201ENSMUST00000210310 1141 ntBASIC16.45■□□□□ 0.22
Usp40Q8BWR4 9430078K24Rik-201ENSMUST00000218818 1082 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Usp40Q8BWR4 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC16.45■□□□□ 0.22
Usp40Q8BWR4 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC16.45■□□□□ 0.22
Usp40Q8BWR4 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp40Q8BWR4 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp40Q8BWR4 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp40Q8BWR4 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp40Q8BWR4 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp40Q8BWR4 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp40Q8BWR4 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp40Q8BWR4 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp40Q8BWR4 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp40Q8BWR4 Oard1-202ENSMUST00000167180 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Usp40Q8BWR4 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
Usp40Q8BWR4 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Usp40Q8BWR4 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Usp40Q8BWR4 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC16.44■□□□□ 0.22
Usp40Q8BWR4 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Usp40Q8BWR4 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Usp40Q8BWR4 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Usp40Q8BWR4 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Usp40Q8BWR4 Uba6-202ENSMUST00000113373 3504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 75 ms