Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Limch1Q3UH68 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Limch1Q3UH68 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Limch1Q3UH68 Eif2s1-201ENSMUST00000071230 3405 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Limch1Q3UH68 Crry-ps-201ENSMUST00000079090 1309 ntBASIC14.21□□□□□ -0.13
Limch1Q3UH68 Gm19692-201ENSMUST00000203856 2084 ntBASIC14.21□□□□□ -0.13
Limch1Q3UH68 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Limch1Q3UH68 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Limch1Q3UH68 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Limch1Q3UH68 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Limch1Q3UH68 Gm25700-201ENSMUST00000177693 110 ntBASIC14.21□□□□□ -0.13
Limch1Q3UH68 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Limch1Q3UH68 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Limch1Q3UH68 Mpzl2-205ENSMUST00000217097 1175 ntTSL 5 BASIC14.21□□□□□ -0.13
Limch1Q3UH68 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC14.21□□□□□ -0.13
Limch1Q3UH68 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Limch1Q3UH68 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC14.21□□□□□ -0.13
Limch1Q3UH68 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Limch1Q3UH68 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Limch1Q3UH68 Gm7537-201ENSMUST00000221660 1414 ntBASIC14.21□□□□□ -0.13
Limch1Q3UH68 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Limch1Q3UH68 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Limch1Q3UH68 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Limch1Q3UH68 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
Limch1Q3UH68 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Limch1Q3UH68 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Limch1Q3UH68 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Limch1Q3UH68 Gm26826-201ENSMUST00000181317 1395 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Limch1Q3UH68 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Limch1Q3UH68 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Limch1Q3UH68 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Limch1Q3UH68 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Limch1Q3UH68 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
Limch1Q3UH68 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Limch1Q3UH68 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Limch1Q3UH68 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Limch1Q3UH68 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Limch1Q3UH68 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Limch1Q3UH68 AC126444.1-201ENSMUST00000225938 1768 ntBASIC14.2□□□□□ -0.14
Limch1Q3UH68 Kcnv2-201ENSMUST00000056708 5108 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Limch1Q3UH68 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Limch1Q3UH68 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Limch1Q3UH68 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC14.2□□□□□ -0.14
Limch1Q3UH68 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC14.2□□□□□ -0.14
Limch1Q3UH68 Gm8856-201ENSMUST00000185254 1144 ntBASIC14.2□□□□□ -0.14
Limch1Q3UH68 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC14.2□□□□□ -0.14
Limch1Q3UH68 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Limch1Q3UH68 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Limch1Q3UH68 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Limch1Q3UH68 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Limch1Q3UH68 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Limch1Q3UH68 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Limch1Q3UH68 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Limch1Q3UH68 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC14.2□□□□□ -0.14
Limch1Q3UH68 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Limch1Q3UH68 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Limch1Q3UH68 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Limch1Q3UH68 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC14.19□□□□□ -0.14
Limch1Q3UH68 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Gm4864-201ENSMUST00000219894 1461 ntBASIC14.19□□□□□ -0.14
Limch1Q3UH68 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC14.19□□□□□ -0.14
Limch1Q3UH68 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Gm25732-201ENSMUST00000175168 60 ntBASIC14.19□□□□□ -0.14
Limch1Q3UH68 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Gm34767-201ENSMUST00000191813 1062 ntBASIC14.19□□□□□ -0.14
Limch1Q3UH68 Gm42997-202ENSMUST00000200321 985 ntBASIC14.19□□□□□ -0.14
Limch1Q3UH68 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC14.19□□□□□ -0.14
Limch1Q3UH68 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Axl-202ENSMUST00000085948 3899 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Gm43727-201ENSMUST00000198021 2647 ntBASIC14.19□□□□□ -0.14
Limch1Q3UH68 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Limch1Q3UH68 Gm9951-202ENSMUST00000149618 1772 ntTSL 2 BASIC14.19□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 80.6 ms