Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 Gm16237-201ENSMUST00000156666 1319 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 Mir181d-201ENSMUST00000102383 72 ntBASIC12.48□□□□□ -0.41
Sox9Q04887 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Sox9Q04887 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC12.48□□□□□ -0.41
Sox9Q04887 Polr2j-203ENSMUST00000111129 474 ntTSL 3 BASIC12.48□□□□□ -0.41
Sox9Q04887 n-R5s84-201ENSMUST00000122591 109 ntBASIC12.48□□□□□ -0.41
Sox9Q04887 Nudt7-204ENSMUST00000134593 707 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 Gm13572-201ENSMUST00000153675 559 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 Gm18367-201ENSMUST00000176139 600 ntBASIC12.48□□□□□ -0.41
Sox9Q04887 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC12.48□□□□□ -0.41
Sox9Q04887 Tex29-205ENSMUST00000209692 884 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Sox9Q04887 Gm45338-206ENSMUST00000211460 1155 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 Gm36423-202ENSMUST00000222215 1298 ntTSL 5 BASIC12.48□□□□□ -0.41
Sox9Q04887 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC12.48□□□□□ -0.41
Sox9Q04887 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC12.48□□□□□ -0.41
Sox9Q04887 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Sox9Q04887 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Sox9Q04887 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sox9Q04887 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC12.47□□□□□ -0.41
Sox9Q04887 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Sox9Q04887 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Sox9Q04887 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sox9Q04887 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC12.47□□□□□ -0.41
Sox9Q04887 Tle6-210ENSMUST00000142948 1961 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sox9Q04887 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sox9Q04887 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Sox9Q04887 Prss47-202ENSMUST00000203968 1353 ntAPPRIS P5 TSL 5 BASIC12.47□□□□□ -0.41
Sox9Q04887 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sox9Q04887 Klk6-201ENSMUST00000107966 1095 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sox9Q04887 Tcf7l2-204ENSMUST00000111649 982 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Sox9Q04887 Gm15207-201ENSMUST00000119259 442 ntBASIC12.47□□□□□ -0.41
Sox9Q04887 Gm11660-201ENSMUST00000120955 412 ntBASIC12.47□□□□□ -0.41
Sox9Q04887 Smim20-201ENSMUST00000147148 922 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sox9Q04887 Gm38389-201ENSMUST00000147871 653 ntTSL 3 BASIC12.47□□□□□ -0.41
Sox9Q04887 Gm24844-201ENSMUST00000158679 127 ntBASIC12.47□□□□□ -0.41
Sox9Q04887 Fxyd5-209ENSMUST00000162087 762 ntAPPRIS P3 TSL 3 BASIC12.47□□□□□ -0.41
Sox9Q04887 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC12.47□□□□□ -0.41
Sox9Q04887 B230110C06Rik-201ENSMUST00000181388 1274 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Sox9Q04887 Gm43552-201ENSMUST00000196121 365 ntAPPRIS P1 TSL 3 BASIC12.47□□□□□ -0.41
Sox9Q04887 Gm3726-201ENSMUST00000203110 785 ntBASIC12.47□□□□□ -0.41
Sox9Q04887 Gm44867-201ENSMUST00000205675 530 ntTSL 3 BASIC12.47□□□□□ -0.41
Sox9Q04887 Gm45758-201ENSMUST00000212448 1006 ntBASIC12.47□□□□□ -0.41
Sox9Q04887 Olfr368-202ENSMUST00000217299 1200 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Sox9Q04887 Gm18514-201ENSMUST00000218980 436 ntBASIC12.47□□□□□ -0.41
Sox9Q04887 Acot13-201ENSMUST00000006900 721 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sox9Q04887 Gm43267-201ENSMUST00000199664 1796 ntBASIC12.47□□□□□ -0.41
Sox9Q04887 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sox9Q04887 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC12.47□□□□□ -0.41
Sox9Q04887 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sox9Q04887 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sox9Q04887 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sox9Q04887 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sox9Q04887 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sox9Q04887 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Sox9Q04887 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Sox9Q04887 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sox9Q04887 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sox9Q04887 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sox9Q04887 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sox9Q04887 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Sox9Q04887 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sox9Q04887 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sox9Q04887 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sox9Q04887 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sox9Q04887 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sox9Q04887 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sox9Q04887 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Sox9Q04887 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Sox9Q04887 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sox9Q04887 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Sox9Q04887 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Sox9Q04887 Gm37795-201ENSMUST00000194216 2459 ntBASIC12.46□□□□□ -0.41
Sox9Q04887 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC12.46□□□□□ -0.41
Sox9Q04887 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sox9Q04887 Gm13019-201ENSMUST00000120000 276 ntBASIC12.46□□□□□ -0.41
Sox9Q04887 Gm13822-201ENSMUST00000127563 346 ntTSL 3 BASIC12.46□□□□□ -0.41
Sox9Q04887 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC12.46□□□□□ -0.41
Sox9Q04887 Ndufc2-202ENSMUST00000149122 470 ntTSL 2 BASIC12.46□□□□□ -0.41
Sox9Q04887 Olfr755-ps1-201ENSMUST00000173568 910 ntBASIC12.46□□□□□ -0.41
Sox9Q04887 Gm29040-201ENSMUST00000189899 1188 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Sox9Q04887 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC12.46□□□□□ -0.41
Sox9Q04887 Gm43275-201ENSMUST00000202053 1020 ntBASIC12.46□□□□□ -0.41
Sox9Q04887 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Sox9Q04887 Gm29763-201ENSMUST00000205306 616 ntBASIC12.46□□□□□ -0.41
Sox9Q04887 Gm45527-201ENSMUST00000211052 774 ntBASIC12.46□□□□□ -0.41
Sox9Q04887 9430078K24Rik-203ENSMUST00000220293 638 ntTSL 3 BASIC12.46□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 47.7 ms