Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Ercc3P49135 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ercc3P49135 Ptprh-202ENSMUST00000166650 3642 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Ercc3P49135 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ercc3P49135 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ercc3P49135 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ercc3P49135 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ercc3P49135 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ercc3P49135 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC14.32□□□□□ -0.12
Ercc3P49135 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ercc3P49135 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Ercc3P49135 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ercc3P49135 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC14.32□□□□□ -0.12
Ercc3P49135 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ercc3P49135 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ercc3P49135 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
Ercc3P49135 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ercc3P49135 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC14.32□□□□□ -0.12
Ercc3P49135 Dmp1-201ENSMUST00000066708 2764 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ercc3P49135 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ercc3P49135 Gm7104-201ENSMUST00000179741 2532 ntBASIC14.32□□□□□ -0.12
Ercc3P49135 Gm13996-201ENSMUST00000118456 430 ntBASIC14.32□□□□□ -0.12
Ercc3P49135 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC14.32□□□□□ -0.12
Ercc3P49135 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC14.32□□□□□ -0.12
Ercc3P49135 Gm37666-201ENSMUST00000194110 866 ntBASIC14.32□□□□□ -0.12
Ercc3P49135 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC14.32□□□□□ -0.12
Ercc3P49135 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ercc3P49135 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC14.32□□□□□ -0.12
Ercc3P49135 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Ercc3P49135 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC14.32□□□□□ -0.12
Ercc3P49135 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC14.32□□□□□ -0.12
Ercc3P49135 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ercc3P49135 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC14.32□□□□□ -0.12
Ercc3P49135 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC14.32□□□□□ -0.12
Ercc3P49135 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Ercc3P49135 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ercc3P49135 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Ercc3P49135 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ercc3P49135 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC14.32□□□□□ -0.12
Ercc3P49135 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
Ercc3P49135 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ercc3P49135 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ercc3P49135 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ercc3P49135 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ercc3P49135 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ercc3P49135 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ercc3P49135 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ercc3P49135 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ercc3P49135 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ercc3P49135 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ercc3P49135 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ercc3P49135 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ercc3P49135 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
Ercc3P49135 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC14.31□□□□□ -0.12
Ercc3P49135 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ercc3P49135 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC14.31□□□□□ -0.12
Ercc3P49135 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ercc3P49135 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ercc3P49135 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ercc3P49135 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ercc3P49135 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ercc3P49135 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ercc3P49135 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ercc3P49135 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ercc3P49135 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ercc3P49135 Gm24990-201ENSMUST00000157406 323 ntBASIC14.31□□□□□ -0.12
Ercc3P49135 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Ercc3P49135 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC14.31□□□□□ -0.12
Ercc3P49135 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ercc3P49135 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Ercc3P49135 Gm29199-201ENSMUST00000187766 775 ntBASIC14.31□□□□□ -0.12
Ercc3P49135 Gstp-ps-201ENSMUST00000195526 631 ntBASIC14.31□□□□□ -0.12
Ercc3P49135 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC14.31□□□□□ -0.12
Ercc3P49135 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC14.31□□□□□ -0.12
Ercc3P49135 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC14.31□□□□□ -0.12
Ercc3P49135 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ercc3P49135 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ercc3P49135 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
Ercc3P49135 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ercc3P49135 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ercc3P49135 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC14.31□□□□□ -0.12
Ercc3P49135 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ercc3P49135 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Ercc3P49135 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Ercc3P49135 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ercc3P49135 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ercc3P49135 Abi1-211ENSMUST00000149719 3303 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ercc3P49135 CU062626.3-201ENSMUST00000225522 1411 ntBASIC14.31□□□□□ -0.12
Ercc3P49135 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ercc3P49135 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
Ercc3P49135 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ercc3P49135 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ercc3P49135 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC14.3□□□□□ -0.12
Ercc3P49135 Myf5-201ENSMUST00000000445 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ercc3P49135 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ercc3P49135 Trim46-201ENSMUST00000041022 3122 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ercc3P49135 Clpb-211ENSMUST00000209579 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ercc3P49135 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
Ercc3P49135 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ercc3P49135 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC14.3□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 78.2 ms