Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col3a1P08121 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col3a1P08121 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col3a1P08121 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Col3a1P08121 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col3a1P08121 Tbc1d22bos-202ENSMUST00000163069 1349 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Col3a1P08121 AC093022.4-203ENSMUST00000228523 2657 ntBASIC14.23□□□□□ -0.13
Col3a1P08121 Gm38089-201ENSMUST00000193585 1514 ntBASIC14.23□□□□□ -0.13
Col3a1P08121 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col3a1P08121 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col3a1P08121 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col3a1P08121 Gm28037-201ENSMUST00000122365 611 ntTSL 3 BASIC14.23□□□□□ -0.13
Col3a1P08121 9430091E24Rik-201ENSMUST00000127301 1067 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Col3a1P08121 Gm16347-202ENSMUST00000149000 772 ntTSL 3 BASIC14.23□□□□□ -0.13
Col3a1P08121 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
Col3a1P08121 1500015O10Rik-201ENSMUST00000027217 902 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col3a1P08121 Smco2-201ENSMUST00000032433 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col3a1P08121 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Col3a1P08121 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col3a1P08121 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col3a1P08121 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Col3a1P08121 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Col3a1P08121 AC166836.1-201ENSMUST00000219933 1795 ntBASIC14.23□□□□□ -0.13
Col3a1P08121 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col3a1P08121 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Col3a1P08121 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col3a1P08121 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC14.22□□□□□ -0.13
Col3a1P08121 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col3a1P08121 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col3a1P08121 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col3a1P08121 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col3a1P08121 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col3a1P08121 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col3a1P08121 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC14.22□□□□□ -0.13
Col3a1P08121 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col3a1P08121 A130077B15Rik-201ENSMUST00000219429 2547 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col3a1P08121 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC14.22□□□□□ -0.13
Col3a1P08121 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col3a1P08121 A230006K03Rik-201ENSMUST00000107533 977 ntTSL 5 BASIC14.22□□□□□ -0.13
Col3a1P08121 Gm15374-201ENSMUST00000119313 844 ntBASIC14.22□□□□□ -0.13
Col3a1P08121 Smim1-204ENSMUST00000130175 477 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Col3a1P08121 Smim1-206ENSMUST00000132541 490 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
Col3a1P08121 Nop56-204ENSMUST00000136621 868 ntTSL 5 BASIC14.22□□□□□ -0.13
Col3a1P08121 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col3a1P08121 Lyzl4os-202ENSMUST00000156364 726 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col3a1P08121 Gm6408-201ENSMUST00000179032 1171 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Col3a1P08121 Gm27232-201ENSMUST00000184373 597 ntTSL 3 BASIC14.22□□□□□ -0.13
Col3a1P08121 Gm8574-201ENSMUST00000203207 924 ntBASIC14.22□□□□□ -0.13
Col3a1P08121 Gm3285-201ENSMUST00000218443 908 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Col3a1P08121 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC14.22□□□□□ -0.13
Col3a1P08121 AC154257.1-202ENSMUST00000224729 843 ntBASIC14.22□□□□□ -0.13
Col3a1P08121 Tff2-201ENSMUST00000024826 584 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col3a1P08121 Polb-201ENSMUST00000033938 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col3a1P08121 BC030499-201ENSMUST00000046361 959 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Col3a1P08121 BC048507-201ENSMUST00000078471 600 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Col3a1P08121 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col3a1P08121 AC157950.1-201ENSMUST00000217561 2168 ntBASIC14.22□□□□□ -0.13
Col3a1P08121 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
Col3a1P08121 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col3a1P08121 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col3a1P08121 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col3a1P08121 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col3a1P08121 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col3a1P08121 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col3a1P08121 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col3a1P08121 Npy5r-202ENSMUST00000211920 1715 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Col3a1P08121 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC14.22□□□□□ -0.13
Col3a1P08121 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Col3a1P08121 Rab30-202ENSMUST00000107179 1304 ntTSL 5 BASIC14.22□□□□□ -0.13
Col3a1P08121 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC14.22□□□□□ -0.13
Col3a1P08121 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col3a1P08121 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col3a1P08121 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col3a1P08121 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col3a1P08121 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col3a1P08121 Ksr1-207ENSMUST00000226282 5260 ntBASIC14.21□□□□□ -0.13
Col3a1P08121 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col3a1P08121 Hpgd-201ENSMUST00000034026 1683 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col3a1P08121 Gm25880-201ENSMUST00000104331 132 ntBASIC14.21□□□□□ -0.13
Col3a1P08121 S100a4-201ENSMUST00000001046 498 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col3a1P08121 Rps10-202ENSMUST00000114881 604 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
Col3a1P08121 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Col3a1P08121 Agtpbp1-216ENSMUST00000168821 721 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Col3a1P08121 Gm38314-201ENSMUST00000195709 625 ntBASIC14.21□□□□□ -0.13
Col3a1P08121 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col3a1P08121 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col3a1P08121 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Col3a1P08121 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col3a1P08121 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Col3a1P08121 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC14.21□□□□□ -0.13
Col3a1P08121 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col3a1P08121 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
Col3a1P08121 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC14.21□□□□□ -0.14
Col3a1P08121 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
Col3a1P08121 Gm13384-201ENSMUST00000117166 1344 ntBASIC14.21□□□□□ -0.14
Col3a1P08121 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
Col3a1P08121 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
Col3a1P08121 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col3a1P08121 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Col3a1P08121 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 75.2 ms