Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Dhx30-212ENSMUST00000197928 4441 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Hcn1-201ENSMUST00000006991 14141 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Gm8908-201ENSMUST00000121633 1024 ntBASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Gm19817-201ENSMUST00000199764 2132 ntBASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Gm44958-201ENSMUST00000203734 736 ntBASIC11.25□□□□□ -0.61
Cdc40Q9DC48 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 AC166344.1-202ENSMUST00000224139 234 ntBASIC11.25□□□□□ -0.61
Cdc40Q9DC48 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Pcdhgb7-201ENSMUST00000194928 4713 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Kalrn-207ENSMUST00000114960 6452 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Ric3-201ENSMUST00000055993 5281 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdc40Q9DC48 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Myo16-201ENSMUST00000042103 6725 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Gm5053-201ENSMUST00000208361 1678 ntBASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Mki67-201ENSMUST00000033310 10061 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Gm43075-201ENSMUST00000198613 3905 ntBASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Nup210-201ENSMUST00000032179 7037 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 5830417I10Rik-201ENSMUST00000135913 6190 ntBASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Grip1-205ENSMUST00000105262 4996 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Gm14208-201ENSMUST00000119645 678 ntBASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Gm9083-201ENSMUST00000120423 819 ntBASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Ighv1-60-201ENSMUST00000195816 405 ntBASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Gm44882-201ENSMUST00000205702 802 ntBASIC11.24□□□□□ -0.61
Cdc40Q9DC48 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC11.24□□□□□ -0.61
Cdc40Q9DC48 AC153974.2-201ENSMUST00000218577 1025 ntBASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Klhl14-201ENSMUST00000049105 4018 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Banp-204ENSMUST00000170857 5444 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Ppp1r16b-203ENSMUST00000103116 6370 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Olfml3-201ENSMUST00000029440 5465 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC11.24□□□□□ -0.61
Cdc40Q9DC48 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms