Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Vps28Q9D1C8 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Vps28Q9D1C8 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
Vps28Q9D1C8 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Vps28Q9D1C8 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Vps28Q9D1C8 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Vps28Q9D1C8 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Vps28Q9D1C8 Rprd1b-203ENSMUST00000109518 4399 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Vps28Q9D1C8 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Vps28Q9D1C8 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Vps28Q9D1C8 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Vps28Q9D1C8 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Vps28Q9D1C8 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Vps28Q9D1C8 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC12.4□□□□□ -0.42
Vps28Q9D1C8 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
Vps28Q9D1C8 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Vps28Q9D1C8 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Vps28Q9D1C8 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Vps28Q9D1C8 Gm23912-201ENSMUST00000104687 87 ntBASIC12.4□□□□□ -0.42
Vps28Q9D1C8 Gm11439-201ENSMUST00000118598 409 ntBASIC12.4□□□□□ -0.42
Vps28Q9D1C8 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Vps28Q9D1C8 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Vps28Q9D1C8 Rprl1-201ENSMUST00000158050 327 ntBASIC12.4□□□□□ -0.42
Vps28Q9D1C8 Gm27341-201ENSMUST00000183570 106 ntBASIC12.4□□□□□ -0.42
Vps28Q9D1C8 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC12.4□□□□□ -0.42
Vps28Q9D1C8 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC12.4□□□□□ -0.42
Vps28Q9D1C8 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Vps28Q9D1C8 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Vps28Q9D1C8 AC098716.1-201ENSMUST00000213527 703 ntBASIC12.4□□□□□ -0.42
Vps28Q9D1C8 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC12.4□□□□□ -0.42
Vps28Q9D1C8 AC160405.1-201ENSMUST00000218207 1545 ntBASIC12.4□□□□□ -0.42
Vps28Q9D1C8 Umod-206ENSMUST00000209095 2571 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Vps28Q9D1C8 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Vps28Q9D1C8 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC12.4□□□□□ -0.42
Vps28Q9D1C8 AC122860.2-201ENSMUST00000217967 2671 ntBASIC12.4□□□□□ -0.42
Vps28Q9D1C8 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Vps28Q9D1C8 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC12.4□□□□□ -0.43
Vps28Q9D1C8 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC12.4□□□□□ -0.43
Vps28Q9D1C8 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.43
Vps28Q9D1C8 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.43
Vps28Q9D1C8 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Vps28Q9D1C8 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.43
Vps28Q9D1C8 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.43
Vps28Q9D1C8 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Gm14208-201ENSMUST00000119645 678 ntBASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 1700034G24Rik-202ENSMUST00000183186 1081 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Gm27627-201ENSMUST00000183644 150 ntBASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Gm4034-201ENSMUST00000187674 480 ntBASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC12.39□□□□□ -0.43
Vps28Q9D1C8 CT025678.1-201ENSMUST00000214795 2972 ntBASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 AC113441.2-201ENSMUST00000221538 1468 ntBASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Kmt5b-207ENSMUST00000113974 4150 ntAPPRIS P3 TSL 5 BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Vps28Q9D1C8 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Vps28Q9D1C8 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Vps28Q9D1C8 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Vps28Q9D1C8 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Vps28Q9D1C8 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Vps28Q9D1C8 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Vps28Q9D1C8 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Vps28Q9D1C8 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Vps28Q9D1C8 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC12.38□□□□□ -0.43
Vps28Q9D1C8 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Vps28Q9D1C8 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Vps28Q9D1C8 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Vps28Q9D1C8 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Vps28Q9D1C8 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC12.38□□□□□ -0.43
Vps28Q9D1C8 Carmil1-201ENSMUST00000072889 4988 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Vps28Q9D1C8 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 83.8 ms