Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col6a1Q04857 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col6a1Q04857 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col6a1Q04857 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col6a1Q04857 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col6a1Q04857 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col6a1Q04857 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col6a1Q04857 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Col6a1Q04857 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col6a1Q04857 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Col6a1Q04857 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Col6a1Q04857 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col6a1Q04857 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Col6a1Q04857 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Col6a1Q04857 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col6a1Q04857 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Col6a1Q04857 Gm43868-201ENSMUST00000205187 2114 ntBASIC13.37□□□□□ -0.27
Col6a1Q04857 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
Col6a1Q04857 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col6a1Q04857 Gm9025-201ENSMUST00000122415 1575 ntBASIC13.37□□□□□ -0.27
Col6a1Q04857 AC113060.1-201ENSMUST00000225689 1573 ntBASIC13.37□□□□□ -0.27
Col6a1Q04857 Ormdl2-201ENSMUST00000026409 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col6a1Q04857 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col6a1Q04857 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col6a1Q04857 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col6a1Q04857 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col6a1Q04857 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col6a1Q04857 AC158355.1-201ENSMUST00000215895 1705 ntBASIC13.37□□□□□ -0.27
Col6a1Q04857 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Col6a1Q04857 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC13.37□□□□□ -0.27
Col6a1Q04857 Churc1-203ENSMUST00000126408 462 ntTSL 2 BASIC13.37□□□□□ -0.27
Col6a1Q04857 Med8-201ENSMUST00000019229 1145 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col6a1Q04857 Gm37299-201ENSMUST00000193951 826 ntBASIC13.37□□□□□ -0.27
Col6a1Q04857 Gadd45a-206ENSMUST00000204282 460 ntTSL 5 BASIC13.37□□□□□ -0.27
Col6a1Q04857 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col6a1Q04857 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col6a1Q04857 Smco2-201ENSMUST00000032433 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col6a1Q04857 Mirlet7i-201ENSMUST00000083472 85 ntBASIC13.37□□□□□ -0.27
Col6a1Q04857 Ccdc153-201ENSMUST00000092426 1087 ntAPPRIS P2 TSL 2 BASIC13.37□□□□□ -0.27
Col6a1Q04857 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Col6a1Q04857 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col6a1Q04857 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col6a1Q04857 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col6a1Q04857 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col6a1Q04857 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Col6a1Q04857 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col6a1Q04857 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col6a1Q04857 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col6a1Q04857 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col6a1Q04857 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC13.37□□□□□ -0.27
Col6a1Q04857 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC13.37□□□□□ -0.27
Col6a1Q04857 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col6a1Q04857 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Col6a1Q04857 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col6a1Q04857 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col6a1Q04857 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col6a1Q04857 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Col6a1Q04857 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col6a1Q04857 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col6a1Q04857 Gm43045-201ENSMUST00000198725 2095 ntBASIC13.36□□□□□ -0.27
Col6a1Q04857 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col6a1Q04857 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col6a1Q04857 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col6a1Q04857 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col6a1Q04857 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col6a1Q04857 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col6a1Q04857 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col6a1Q04857 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col6a1Q04857 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col6a1Q04857 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC13.36□□□□□ -0.27
Col6a1Q04857 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col6a1Q04857 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col6a1Q04857 Gm12857-201ENSMUST00000117678 592 ntBASIC13.36□□□□□ -0.27
Col6a1Q04857 Gm11801-201ENSMUST00000117807 746 ntBASIC13.36□□□□□ -0.27
Col6a1Q04857 Gm13668-201ENSMUST00000119237 1001 ntBASIC13.36□□□□□ -0.27
Col6a1Q04857 Gm11956-201ENSMUST00000119525 512 ntBASIC13.36□□□□□ -0.27
Col6a1Q04857 Gm15703-201ENSMUST00000120250 880 ntBASIC13.36□□□□□ -0.27
Col6a1Q04857 Gm1848-201ENSMUST00000120711 789 ntBASIC13.36□□□□□ -0.27
Col6a1Q04857 Gm25545-201ENSMUST00000122673 323 ntBASIC13.36□□□□□ -0.27
Col6a1Q04857 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC13.36□□□□□ -0.27
Col6a1Q04857 Nop16-202ENSMUST00000148222 790 ntTSL 5 BASIC13.36□□□□□ -0.27
Col6a1Q04857 Gm13703-201ENSMUST00000150705 449 ntTSL 2 BASIC13.36□□□□□ -0.27
Col6a1Q04857 Gm11706-201ENSMUST00000151282 316 ntTSL 5 BASIC13.36□□□□□ -0.27
Col6a1Q04857 Mir1956-201ENSMUST00000157748 65 ntBASIC13.36□□□□□ -0.27
Col6a1Q04857 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC13.36□□□□□ -0.27
Col6a1Q04857 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC13.36□□□□□ -0.27
Col6a1Q04857 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Col6a1Q04857 Gm8343-201ENSMUST00000182705 994 ntBASIC13.36□□□□□ -0.27
Col6a1Q04857 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col6a1Q04857 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col6a1Q04857 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col6a1Q04857 Gm45717-201ENSMUST00000211129 495 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
Col6a1Q04857 E230034D01Rik-201ENSMUST00000214440 1212 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col6a1Q04857 Gm10288-201ENSMUST00000084614 537 ntBASIC13.36□□□□□ -0.27
Col6a1Q04857 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC13.36□□□□□ -0.27
Col6a1Q04857 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Col6a1Q04857 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col6a1Q04857 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col6a1Q04857 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col6a1Q04857 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 63.6 ms