Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm12179-201ENSMUST00000118344 1272 ntBASIC18.28■□□□□ 0.52
Cux1P53564 Gm12682-201ENSMUST00000144637 1081 ntTSL 5 BASIC18.28■□□□□ 0.52
Cux1P53564 Gm17709-201ENSMUST00000174536 1096 ntBASIC18.28■□□□□ 0.52
Cux1P53564 Gm37013-201ENSMUST00000194544 313 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Cux1P53564 Gm7082-201ENSMUST00000209880 969 ntBASIC18.28■□□□□ 0.52
Cux1P53564 AC168279.1-201ENSMUST00000214611 382 ntBASIC18.28■□□□□ 0.52
Cux1P53564 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cux1P53564 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cux1P53564 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Cux1P53564 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cux1P53564 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cux1P53564 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC18.28■□□□□ 0.52
Cux1P53564 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cux1P53564 Gm38094-201ENSMUST00000195864 2978 ntBASIC18.28■□□□□ 0.52
Cux1P53564 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Cux1P53564 Abcg2-202ENSMUST00000114294 2178 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Cux1P53564 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Cux1P53564 Gm10750-201ENSMUST00000099266 1506 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Cux1P53564 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Cux1P53564 Traf3ip3-212ENSMUST00000192020 1854 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
Cux1P53564 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cux1P53564 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Cux1P53564 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Cux1P53564 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cux1P53564 Clcc1-202ENSMUST00000106609 2043 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cux1P53564 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Cux1P53564 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Cux1P53564 Tatdn3-203ENSMUST00000110891 1214 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Cux1P53564 Tatdn3-204ENSMUST00000110893 1242 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cux1P53564 Cetn2-203ENSMUST00000114551 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cux1P53564 Ice2-202ENSMUST00000117246 1201 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Cux1P53564 Gm12247-201ENSMUST00000117585 670 ntBASIC18.28■□□□□ 0.52
Cux1P53564 Gm16081-201ENSMUST00000155992 684 ntTSL 3 BASIC18.28■□□□□ 0.52
Cux1P53564 Gm18201-201ENSMUST00000174735 875 ntBASIC18.28■□□□□ 0.52
Cux1P53564 A930005H10Rik-204ENSMUST00000185681 625 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Cux1P53564 A930005H10Rik-206ENSMUST00000188260 739 ntTSL 2 BASIC18.28■□□□□ 0.52
Cux1P53564 4930555K19Rik-201ENSMUST00000060066 171 ntBASIC18.28■□□□□ 0.52
Cux1P53564 Gm13306-201ENSMUST00000098122 418 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cux1P53564 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC18.28■□□□□ 0.52
Cux1P53564 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cux1P53564 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
Cux1P53564 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cux1P53564 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cux1P53564 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cux1P53564 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cux1P53564 Gabarapl2-201ENSMUST00000034428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cux1P53564 Harbi1-202ENSMUST00000111322 1316 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Cux1P53564 Tle6-210ENSMUST00000142948 1961 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cux1P53564 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cux1P53564 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cux1P53564 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cux1P53564 Churc1-203ENSMUST00000126408 462 ntTSL 2 BASIC18.27■□□□□ 0.51
Cux1P53564 Cntrobos-201ENSMUST00000132834 383 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Cux1P53564 Gm15409-201ENSMUST00000135240 520 ntTSL 2 BASIC18.27■□□□□ 0.51
Cux1P53564 Gm44552-201ENSMUST00000205458 1247 ntBASIC18.27■□□□□ 0.51
Cux1P53564 Gm45484-201ENSMUST00000210310 1141 ntBASIC18.27■□□□□ 0.51
Cux1P53564 Gm7959-201ENSMUST00000221823 1078 ntBASIC18.27■□□□□ 0.51
Cux1P53564 AC156501.1-201ENSMUST00000228219 270 ntBASIC18.27■□□□□ 0.51
Cux1P53564 Gm4604-201ENSMUST00000025040 390 ntBASIC18.27■□□□□ 0.51
Cux1P53564 Mcts2-201ENSMUST00000062148 917 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
Cux1P53564 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Cux1P53564 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Cux1P53564 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC18.27■□□□□ 0.51
Cux1P53564 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Cux1P53564 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Cux1P53564 AC158636.1-201ENSMUST00000220118 1393 ntBASIC18.27■□□□□ 0.51
Cux1P53564 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
Cux1P53564 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cux1P53564 Gm13561-201ENSMUST00000136879 1826 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Cux1P53564 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cux1P53564 Gm4409-201ENSMUST00000130734 1919 ntTSL 2 BASIC18.26■□□□□ 0.51
Cux1P53564 H2afv-202ENSMUST00000109737 1633 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cux1P53564 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Cux1P53564 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cux1P53564 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cux1P53564 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Cux1P53564 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cux1P53564 Trmt10b-202ENSMUST00000107800 983 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Cux1P53564 Gm6322-201ENSMUST00000118789 1004 ntBASIC18.26■□□□□ 0.51
Cux1P53564 Hcrtr1-204ENSMUST00000164887 1251 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Cux1P53564 Gm43163-201ENSMUST00000196571 442 ntBASIC18.26■□□□□ 0.51
Cux1P53564 Gm5996-201ENSMUST00000211110 718 ntBASIC18.26■□□□□ 0.51
Cux1P53564 Gm25201-201ENSMUST00000083093 170 ntBASIC18.26■□□□□ 0.51
Cux1P53564 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cux1P53564 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC18.26■□□□□ 0.51
Cux1P53564 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cux1P53564 Pdlim2-201ENSMUST00000022681 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cux1P53564 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Cux1P53564 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cux1P53564 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cux1P53564 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC18.25■□□□□ 0.51
Cux1P53564 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cux1P53564 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cux1P53564 Stk31-201ENSMUST00000024171 3237 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cux1P53564 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC18.25■□□□□ 0.51
Cux1P53564 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cux1P53564 Mir671-201ENSMUST00000102432 98 ntBASIC18.25■□□□□ 0.51
Cux1P53564 Gm25053-201ENSMUST00000103982 133 ntBASIC18.25■□□□□ 0.51
Cux1P53564 Gm25922-201ENSMUST00000104281 130 ntBASIC18.25■□□□□ 0.51
Cux1P53564 Rfc4-202ENSMUST00000115337 416 ntTSL 5 BASIC18.25■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms