Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm8343-201ENSMUST00000182705 994 ntBASIC14.02□□□□□ -0.17
Traf1P39428 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Traf1P39428 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC14.02□□□□□ -0.17
Traf1P39428 Gm4157-201ENSMUST00000211647 679 ntBASIC14.02□□□□□ -0.17
Traf1P39428 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC14.02□□□□□ -0.17
Traf1P39428 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Traf1P39428 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC14.02□□□□□ -0.17
Traf1P39428 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Traf1P39428 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Traf1P39428 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Traf1P39428 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Traf1P39428 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Traf1P39428 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
Traf1P39428 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Traf1P39428 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Traf1P39428 Srsf5-205ENSMUST00000110356 1568 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
Traf1P39428 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Traf1P39428 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC14.01□□□□□ -0.17
Traf1P39428 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Traf1P39428 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Traf1P39428 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Traf1P39428 Tead3-207ENSMUST00000219703 1320 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Traf1P39428 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Traf1P39428 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC14.01□□□□□ -0.17
Traf1P39428 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Traf1P39428 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC14.01□□□□□ -0.17
Traf1P39428 Gm12201-201ENSMUST00000120657 1234 ntBASIC14.01□□□□□ -0.17
Traf1P39428 Gm6039-201ENSMUST00000121667 1250 ntBASIC14.01□□□□□ -0.17
Traf1P39428 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC14.01□□□□□ -0.17
Traf1P39428 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Traf1P39428 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC14.01□□□□□ -0.17
Traf1P39428 Gm5732-201ENSMUST00000182596 1007 ntBASIC14.01□□□□□ -0.17
Traf1P39428 Gm38114-201ENSMUST00000191877 1232 ntBASIC14.01□□□□□ -0.17
Traf1P39428 Gm19817-201ENSMUST00000199764 2132 ntBASIC14.01□□□□□ -0.17
Traf1P39428 Gm43868-201ENSMUST00000205187 2114 ntBASIC14.01□□□□□ -0.17
Traf1P39428 Gm21027-201ENSMUST00000219300 1236 ntBASIC14.01□□□□□ -0.17
Traf1P39428 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Traf1P39428 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Traf1P39428 Gm26448-201ENSMUST00000082446 203 ntBASIC14.01□□□□□ -0.17
Traf1P39428 Gm21811-201ENSMUST00000096485 930 ntBASIC14.01□□□□□ -0.17
Traf1P39428 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Traf1P39428 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Traf1P39428 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Traf1P39428 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Traf1P39428 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Traf1P39428 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Traf1P39428 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC14□□□□□ -0.17
Traf1P39428 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC14□□□□□ -0.17
Traf1P39428 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Traf1P39428 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC14□□□□□ -0.17
Traf1P39428 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Traf1P39428 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC14□□□□□ -0.17
Traf1P39428 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC14□□□□□ -0.17
Traf1P39428 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Traf1P39428 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Traf1P39428 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC14□□□□□ -0.17
Traf1P39428 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Traf1P39428 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC14□□□□□ -0.17
Traf1P39428 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Traf1P39428 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Traf1P39428 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC14□□□□□ -0.17
Traf1P39428 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC14□□□□□ -0.17
Traf1P39428 Gm44136-201ENSMUST00000203819 1106 ntBASIC14□□□□□ -0.17
Traf1P39428 Gm45418-202ENSMUST00000210693 649 ntTSL 5 BASIC14□□□□□ -0.17
Traf1P39428 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC14□□□□□ -0.17
Traf1P39428 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC14□□□□□ -0.17
Traf1P39428 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC14□□□□□ -0.17
Traf1P39428 Spcs1-203ENSMUST00000226374 592 ntBASIC14□□□□□ -0.17
Traf1P39428 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Traf1P39428 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC14□□□□□ -0.17
Traf1P39428 Wdcp-205ENSMUST00000220215 2202 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Traf1P39428 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC14□□□□□ -0.17
Traf1P39428 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC14□□□□□ -0.17
Traf1P39428 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC14□□□□□ -0.17
Traf1P39428 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC14□□□□□ -0.17
Traf1P39428 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Traf1P39428 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Traf1P39428 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Traf1P39428 Gm7104-201ENSMUST00000179741 2532 ntBASIC14□□□□□ -0.17
Traf1P39428 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Traf1P39428 Ank2-203ENSMUST00000182008 2474 ntTSL 1 (best) BASIC14□□□□□ -0.17
Traf1P39428 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC14□□□□□ -0.17
Traf1P39428 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Traf1P39428 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
Traf1P39428 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Traf1P39428 Gm36970-201ENSMUST00000193688 1859 ntBASIC13.99□□□□□ -0.17
Traf1P39428 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Traf1P39428 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Traf1P39428 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Traf1P39428 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Traf1P39428 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Traf1P39428 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Traf1P39428 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Traf1P39428 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Traf1P39428 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Traf1P39428 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Traf1P39428 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Traf1P39428 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Traf1P39428 Tsku-201ENSMUST00000094161 2760 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Traf1P39428 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC13.99□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms